ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584306 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◣ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2A
PSMD1
NME6
RABL2B
MAPKAPK5
TAOK3
SUDS3
RWDD1
CACTIN
POLR3F
DZANK1
DYNC1LI2
VDAC2
NUP85
IPO13
NUP205
HSPA9
VTI1B
PSMG2
CEP76
GOSR2
RPL21
NVL
POLR2E
GPX4
G6PC2
SEC61B
ALG2
ATP5MG
C19orf48
NEUROG2
FAM187A
EFTUD2
CCDC103
TBCK
AIMP1
FARSB
ACTR10
EXOSC5
BCKDHA
LBX1
MRPS7
MIF4GD
GGA3
STAM2
HADHB
HADHA
ZNF576
IRGQ
WNT1
PNO1
REXO1
PAK1IP1
C6orf52
SKP1
DCTN1
NNAT
BLCAP
STAM
SRD5A1
PES1
CAPRIN1
TSNAX
LYRM4
FARS2
S1PR4
NCLN
TSN
SART3
ISCU
ARF1
SUPV3L1
UPF2
CDX2
ANAPC7
RPS23
ATP6AP1L
COX7A2L
IGFBP2
ZRANB2
SF3B3
COG4
ZNF608
VEZT
FGD6
FZD8
GLRA1
PCBP1
NEUROG3
DNAJB7
XPNPEP3
ST13
RPL35A
IQCG
LMLN
ARHGAP10
VARS1
TTC8
GOLGA5
RPS27A
CLHC1
DUX4
ITGB6
NDUFA4
SLC35B1
ICMT
HES3
RABGGTB
DPH6
PDAP1
BUD31
PI4KB
PLAGL1
ADK
AP3M1
RPS12
SMC2
SFI1
EIF4ENIF1
RBBP5
PPP1R1B
PSMD12
ZNF503
SERINC5
UFM1
TMED1
HES1
ADNP2
NHS
HSPA1B
CALCOCO1
SELENOF
HS2ST1
RAB11FIP1
MRPS5
MALRD1
ICE1
FAM104A
C17orf80
USP1
RBKS
BABAM2
UBE2I
PIP4P1
OSGEP
APEX1
KDM8
INSM1
BNIP3
NFKBIL1
DDX39B
ATP6V1G2
URM1
ATOH1
OR10AC1
PAF1
NAV3
TM9SF1
IPO4
TSSK4
ASXL3
PROSER1
NHLRC3
PRDM12
UNKL
C16orf91
RHBDD3
EWSR1
NEK3
MBTPS1
PTGES2
ETS1
ARID3C
DCTN3
RIMKLB
PIN4
HOXA3
HOXA4
C6orf47
APOM
BAG6
LARP7
UNCX
FGF19
RPS29
LRR1
LOC102724770
DGCR6
TAF9
RAD17
AK6
OR6B2
NDUFA10
BICRA
CR1L
ERRFI1
NUTM2D
DBX1
TPM1
ANK2
TMEM120B
CERCAM
NOTCH2
DUSP6
FAM222A
MYLK4
BFSP1
TLE4
TESC
EVA1A
RBBP7
ARHGAP11A-SCG5
ARHGAP11A
ME3
TRABD2B
DDAH1
CCN1
MUC20
PRRX1
NR2F1
MRPL3
MRTO4
EMC1
SCGB1A1
ZP4
SULF1
IL17RD
LZTS1
SYBU
SUCLG1
RAI14
NCOA7
ID2
SOX21
SEMA6D
KIF26A
KDM2B
COMMD1
CCT4
SLC7A5
PMAIP1
LAMA4
PARP11
EIF2S3
PPFIBP2
TMEM107
NEK7
TPRA1
MCM2
HOXB3
PDHB
HOXB4
DUSP29
GTF3C4
DDX31
LRIG1
FRG2C
HOXB1
RGS12
GADD45GIP1
DMRT3
STK36
RNF25
DTX4
RASL10B
ZFHX4
PSMB5
CNPY2
ALDH1A2
SPACA1
RPL7
RDH10
HNF1A
SEC11C
LRRC4
NEUROD1
DIPK1B
TMEM14A
DDX3X
CITED2
HK3
PCBD2
CAMTA1
TBX3
LRATD2
HOXD3
HOXD4
FABP7
SMPDL3A
CCDC33
ANKLE2
DLX4
FXYD2
DSCAML1
GPR176
MEIS2
TDG
C12orf73
CLDN2
PCDH11Y
PHOX2B
PAX6
SCN5A
DLL4
GFRA3
FRMD7
WDR59
COL17A1
TPST2
RPN1
ZNF585B
ZNF383
BRINP1
FOXP2
SLC10A2
PHC2
CACNA1D
HSPB8
SCARB1
RFX2
NID1
CLDN11
DMBX1
MYO10
CBFA2T2
SKIL
ID1
PAH
PDZRN3
ASCL1
SALL1
METTL24
BAIAP2
NEUROG1
CRYAA2
CRYAA
EVX1
TMEM212
NMNAT2
CEP41
PRUNE2
KIF21B
PPP1R1A
PDHX
APIP
OAZ3
MRPL9
ZNF214
NLRP14
FOXB1
ZNF367
PAX3
MET
RBM15
MXI1
B3GALT5
GAS7
PKNOX2
PANK4
HES5
REV3L
GTF3A
SMARCA2
ZFX
ABLIM3
TPH2
ERLIN2
LPIN1
FOXD3
PAX8
CDC73
VOPP1
PDPN
HHIP
TMA16
CPSF4L
AQP6
ENO1
CLEC18C
ALKBH5
ZDHHC1
GPR20
RFX3
KLF17
ECEL1
CNTN4
AMD1
FOSB
DAPL1
CLEC19A
FEZF2
PLEKHA5
NOXO1
SYNGR3
GFER
ZPBP
RGL1
SEC22B
MSX1
LRIG3
TNC
ADGRL2
CXCL12
OCLN
NEDD9
GAD2
GORAB
STARD13
FAM171A2
LHX2
FSTL1
FAM107A
CLGN
ACSS3
MBNL3
DHX32
METTL11B
TMSB15B
FBLN1
HNMT
CCND1
CDC42EP2
PDE6B
CNTN1
CDH18
SNAPC1
PNKD
TBC1D8
OR8J1
EFNB2
GADD45G
GFRA1
LIN28B
UPF3A
MDFIC
LDHB
IFNA21
CREB5
CDH16
ARHGEF28
GATA3
GCSAM
OTX1
EPHA5
KLHDC8A
TMEM275
RPL34
BRWD1
HNRNPA2B1
CBX3
SOCS3
AXDND1
FREM1
TIGD1
EIF4E2
ZGPAT
ARFRP1
ABCG2
GUCY1A1
HOXA2
SMURF1
SALL4
RPS10-NUDT3
RPS10
JAKMIP1
HOXC6
HOXC5
TMPPE
GLB1
LIX1
MEIS3
VCAN
MEOX1
PPP2R5A
DHRS4L1
ERICH3
ST18
TYRO3
KLHL7
IFT20
TMEM97
FAM120B
DLL1
PDE12
PON2
IRX5
DNMBP
CATSPERG
OPLAH
RPL17-C18orf32
RPL17
DAAM1
TLE1
C8B
RPL24
CADM3
IGFL3
NRG2
ZBTB25
ZBTB1
FGFR2
ZNF746
HOXC4
ELMOD2
LHFPL2
EGF
KAZALD1
KRT16
TLE3
DOCK10
GGCT
STRA6
RPS24
POLR3A
SYNPR
FJX1
PDE1B
CA14
RABGAP1L
LHPP
MEF2C
VSTM2L
FRG2
MYRIP
EIF4E3
FILIP1L
DHRS3
STXBP5L
TRIM71
SCARF1
RILP
THEMIS
RUNX1T1
C5orf63
SYNPO
NRXN2
TRIM56
ATOH8
DEFA5
OR5A2
OR5A1
MAB21L2
LRRC1
YAP1
HOXB8
HOXB7
HOXB6
TAGLN3
GZMK
GMPR
RIPOR2
LIPG
TLE2
KCNN4
USP29
RASL12
KBTBD13
ZNF341
NNMT
IRF2BP2
GPR82
MIER1
DNAI4
CDK14
RARA
DRD2
TCF4
CLMP
CEMP1
PDPK1
TDRD7
NXPH2
SCARF2
CNKSR3
HSPA1L
HSPA1A
LRGUK
XIAP
RAN
MUSTN1
ITIH4
ATP6V1B1
C8orf34
TIGD4
ARFIP1
CS
NRARP
ZFHX2
PGLYRP1
IGFL4
TANC1
FRRS1L
KMT2A
ECM1
ZFHX3
POP5
NINL
USH1C
OTOG
EFNA5
MAFA
CER1
FABP5
BAZ2B
TTYH1
PIGR
FHL1
APTX
DNAJA1
SLC15A3
ADGRL3
CBY2
RYBP
PRR16
WBP1L
TRAP1
ME2
FKBP1A
CPA1
SLC39A6
PCDH18
SLC22A2
ADAMTS18
CPLX1
MTMR7
NELFA
ATP1A4
HNRNPD
CECR2
RFX6
CP
CHODL
OTOL1
CYP51A1
CCDC88C
LIG3
TRIM65
MRPL38
PPP1R35
ZCWPW1
MEPCE
CACNA1H
CSN3
CRABP2
EIF2S1
ATP6V1D
SPG7
ALOX5AP
RCOR3
EPB41L2
UBR2
RXRG
LIN28A
ARMC12
TIAM1
AJUBA
LOC150051
LRRN1
IGFN1
SPCS1
GLT8D1
LRRC10B
CDCA7
CYP26A1
METTL3
SALL2
SYTL2
MSI1
CUEDC1
GNAI1
LDLRAD3
KEAP1
KRT20
REC8
FAM124A
ABCB5
MSX2
IFI16
PYDC5
TMCC3
SLC45A3
SLC14A1
C1orf100
PAX7
ARHGAP24
ATF3
FOXL3
ASB6
CACNA1S
ASCL5
NFE2
PAK3
ZSWIM6
BMPR1B
PALM2AKAP2
IKBKB
METRN
ANTKMT
CCDC78
BTF3
NAF1
LINGO1
FAM214B
STOML2
PIGO
SLC28A1
POU3F1
GATA6
HOXA1
COX5A
POU2F1
UPP2
TFDP2
DNMT3B
PJA2
TMEM9
EVX2
ITPRIP
CHD8
GJA1
ATXN10
RIC8B
CLEC18B
TNFRSF19
CXCL5
PPBP
PF4
LOXL4
RARB
EIF4H
TEX46
KDM1A
ZMAT4
LIPE
CATSPERB
PDE4DIP
PCDH8
DACT2
LEMD2
TMEFF2
PRAMEF12
PRAMEF1
BAMBI
FGFR4
PITPNM3
TPO
RBP3
CNN3
KIAA0895
SLC2A9
LDLRAP1
VGLL4
FRY
PERP
FAT2
TMEM70
ELOC
SRSF11
LRRC40
FOXA2
OLFML2A
NR6A1
C1orf226
HAAO
FOXO3
HRK
ARL4C
CRKL
SMC6
GEN1
FABP9
TRDMT1
CYRIB
PLEKHA6
TP53INP1
CCDC141
C1orf141
ADM
SUPT20HL1
CHN2
CPVL
RCOR1
LOC102723360
TBL1XR1
SP8
DGKZ
ADAMTS15
RBPJ
SORBS1
HTR1F
BANK1
AHSP
DICER1
EOMES
CCDC169-SOHLH2
CCDC169
RBM20
MECOM
ARSF
ARHGEF4
PPP1R2C
SOAT2
IGFBP6
QPRT
SEMA5B
BNC2
FOXB2
NPAS1
NCOR2
IPO11
DIMT1
LRRC15
NEBL
C6orf132
ZFAND2B
PTGR1
LRP2
N4BP3
TSPAN13
BECN2
ACOT6
TTLL6
PEX2
SPRY1
SNX1
CIAO2A
RHOB
CCDC198
DMD
PKHD1
MAP2
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
TRIM2
PPP1R12B
ADO
PLPPR1
ACBD5
ERCC1
SIT1
CCDC107
ARHGEF39
TRAF3IP2
HEY1
SKOR1
STXBP6
HRH3
TAS2R41
NKX2-8
SH2B1
UROD
HECTD3
NKX2-6
DST
C21orf62
LIG4
ABHD13
WWC2
GIGYF1
ZNF775
SLC39A7
RXRB
HSD17B8
RING1
ABAT
CA4
OR52E2
PCBP4
GPR62
ALPK3
BBS9
FLRT3
AIPL1
PIMREG
USP17L21
USP17L20
USP17L12
USP17L13
USP17L11
USP17L18
USP17L10
LRRC8C
ATP5MC2
ONECUT2
FBXO10
GPC6
LMO4
ATXN7
CLDND1
GPR15
SOX11
GDF10
PKDCC
NECTIN1
SERPING1
ZNF853
MROH7
KMT2B
GALNTL5
CD79A
ARHGEF1
SRGAP3
NBPF9
PANK2
TCF7L2
CEBPA
KBTBD8
BTBD1
THRAP3
LCA5
FIGNL2
PIPOX
NKIRAS1
NR1D2
BCO1
DRAP1
C11orf68
USP17L22
MNT
CCDC43
PACSIN2
CCDC200
SPOCK2
HOXB5
MSI2
TLN1
CREB3
KCNIP4
NEUROD4
SYNM
KCTD1
LOC102724265
TCHP
SLAMF8
CFAP69
ADCY8
PVR
MAP2K6
H2BU1
H2AW
CDX1
RFFL
PGM2L1
VXN
ID3
SOX5
FNIP2
GNB2
ACTL6B
ADAMTS10
CALHM6
P2RX6
PRRC2C
SNCG
MMRN2
TMEM88B
VWA1
FGFRL1
CABP7
NXPH4
PADI2
NEGR1
ELMO1
LYPD6B
PTCH2
TGM3
RPH3A
SPTBN1
DTNB
KCNN2
ZNF878
GPR157
FOXP1
MTF2
SOX6
EYS
NKX2-3
PYGM
DLGAP1
ALPL
NEDD4L
GYPC
MATR3
RTP4
GJA3
NRXN1
ZNF593
C1orf232
CNKSR1
NCK1
TFAP2B
FAM110D
CCBE1