ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584303 | iPSC derived chondrocytes
 
Color legends
  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

Download: TSV (text)
Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◣ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
DUSP29
NME6
MAPKAPK5
RWDD1
IPO13
POLR3F
DZANK1
CACTIN
ZP4
TAOK3
SUDS3
PSMG2
CEP76
FAM187A
EFTUD2
CCDC103
NUP85
VDAC2
GRSF1
NVL
HSPA9
MBTPS1
DYNC1LI2
ZNF503
SP5
RPL21
C19orf48
POLR2E
GPX4
PMAIP1
STAM2
STAM
GOSR2
TBCK
AIMP1
TSN
ATP5MG
VTI1B
REXO1
NUP205
LEFTY2
MRPS7
MIF4GD
GGA3
EXOSC5
BCKDHA
NDUFA4
DCTN1
CAPRIN1
SEC61B
ALG2
NNAT
BLCAP
ZNF576
IRGQ
UPF2
PES1
PNO1
SKP1
NEUROG2
S1PR4
NCLN
PAK1IP1
C6orf52
FARSB
RBBP5
SLC35B1
DUX4
TSNAX
ACTR10
DPH6
ARHGAP10
SELENOF
HS2ST1
GOLGA5
SRD5A1
HADHB
HADHA
UBE2I
TMED1
LYRM4
FARS2
RPS12
PROSER1
NHLRC3
PCBP1
VARS1
RBKS
BABAM2
TTC8
PHOX2B
PSMD12
ICE1
RPS23
ATP6AP1L
SPECC1
MRPS5
ANAPC7
USP1
SMC2
COX7A2L
SFI1
EIF4ENIF1
ZRANB2
PI4KB
SART3
ISCU
FAM104A
C17orf80
HSPA1B
ICMT
HES3
PALM2AKAP2
RPL35A
IQCG
LMLN
SUPV3L1
RABGGTB
PDAP1
BUD31
ADK
AP3M1
UFM1
PAF1
CNTN1
C6orf47
APOM
BAG6
TM9SF1
IPO4
TSSK4
CHRND
PRSS56
SF3B3
COG4
PAX6
DNAJB7
XPNPEP3
ST13
NKD1
PTGES2
PRRX1
PIP4P1
OSGEP
APEX1
COMMD1
CCT4
PDZD2
PIN4
LOC102724770
DGCR6
NHS
NFKBIL1
DDX39B
ATP6V1G2
FOXB1
RPS27A
CLHC1
STK36
RNF25
NR2F1
IRX5
LZTS1
NEUROG1
GRIP1
NEUROG3
RPS29
LRR1
TCF7L2
BICRA
UNC5A
MSX1
EOLA2
SUCLG1
OR6B2
NDUFA10
CBFA2T2
MUC12
ZNF608
IGFBP2
GLRA1
OR2L13
OR2AJ1
FRG2C
EIF2S3
SMC6
GEN1
ANKLE2
FOXA2
KLF17
PPP1R1B
TAF9
RAD17
AK6
SLC39A7
RXRB
HSD17B8
COL11A2
RING1
POU3F2
SLAMF8
PDE6B
OAZ3
MRPL9
ZSWIM6
OTX1
ECEL1
SEC11C
PDHX
APIP
ARHGAP11A-SCG5
ARHGAP11A
CDH18
SERINC5
HOXA3
HOXA4
CDX2
MAGIX
KLHL25
CERCAM
GADD45GIP1
RPL7
RDH10
TMEM212
CPSF4L
GPR78
ATOH1
KANK4
CDC73
ARF1
URM1
GADD45G
FMNL2
CR1L
MRTO4
EMC1
NRXN2
PDPN
PCBD2
BNIP3
GTF3C4
DDX31
MSX2
GORAB
HOXB3
HOXB4
MBNL3
CDX1
HAO1
HES1
CNPY2
RPN1
METTL11B
WBP1L
TMPPE
GLB1
ST18
RBBP7
PNKD
HOXC4
IL17RD
METTL24
KDM2B
OTUB2
CSRNP1
ZNF585B
ZNF383
KIAA0895
DMBX1
FKBP1A
FZD8
TRABD2B
SMPD1
EXT1
AXDND1
STK38
ETS1
SKIL
HOXB1
ALKBH5
SRCIN1
GATA6
PFKP
TLE3
KLHDC8A
PRUNE2
FOSB
ZFHX2
ZADH2
TSHZ1
FGF2
CCDC33
MALRD1
ZGPAT
ARFRP1
CACNA1D
SP7
HSPA1L
HSPA1A
TTC13
KRT74
LZTFL1
CA4
PLAGL1
ADNP2
HNRNPA3
TTYH1
GAD2
CDH12
ALDH1A2
SNCG
MMRN2
CTXN3
MMP3
FOXP4
SP8
LRATD2
HOXA2
HES7
ALOXE3
EBP
FRG2
MESP1
TRIM65
MRPL38
FGFR2
MYRIP
PDHB
LIG3
WNT1
SULF1
C5orf63
HOXD3
HOXD4
ONECUT2
CLGN
UROD
HECTD3
ADGRL2
SRSF11
LRRC40
NKX2-2
ABLIM3
SYBU
CHI3L1
MYBPH
NEBL
OLFML2A
NR6A1
GIMAP5
MEIS2
PBX3
FBXL18
ACTB
YWHAB
LY6G6F-LY6G6D
LY6G6F
MPIG6B
LY6G6C
LY6G6D
C1QL3
TKT
SCN5A
PAX4
EVX1
PRCP
DDIAS
MDFIC
PITX2
CHN2
CPVL
CDC42EP2
RNF32
VEZT
FGD6
SPCS1
GLT8D1
PRKRIP1
GUCY1A1
PDE12
DLL4
NAV3
TTLL6
LRRC8C
FMOD
FAM3C
CDT1
PIEZO1
EIF4H
SLITRK5
NECTIN1
ABHD14B
ABHD14A-ACY1
ABHD14A
PCBP4
CLDN9
CLDN6
SOST
NUP210
APBA1
TBX3
DERL3
SLC2A11
FAM72C
SRGAP2B
FAM72D
AEN
FOXD1
HOXB8
HOXB7
HOXB9
GUK1
GJC2
PAH
ASCL1
C11orf95
TBC1D8
SNX1
CIAO2A
MEIS3
ZDHHC1
GSPT1
FBXW11
BMPER
CADM3
GDNF
B4GALT5
DGKZ
STK38L
SUSD6
HERPUD1
TLE2
VGLL4
LYPD6B
MDFI
FAM107B
NCOA7
TMEM123
MYLK4
ASXL3
TMSB15B
IPO8
RASL10B
RABL3
GTF2E1
DKK1
NELFA
LHPP
ITPRIP
TMEM131L
KDM8
HHIP
CCDC200
H2BC17
H2AC17
H3C12
ARSI
ZNF740
CSAD
HOXD1
DDAH1
CCN1
SH3D19
DUSP6
PTGES3
CNTN4
NMNAT2
TNFRSF1A
ULBP3
SYNGR4
MYORG
C9orf24
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
BNIP2
RPS24
POLR3A
TK1
COQ3
HOXA7
HOXA9
CS
GCNT2
ZPLD1
HAS2
EML4
CMTR1
TMEM275
TRAP1
LINGO1
ENO1
YAP1
GRAMD2B
TEAD1
CSRNP3
SNAPC1
KCNN4
WNT10A
PAX2
OR52E2
RPH3A
UQCC2
EYA1
BUB1
LIN28B
ZNF471
AGO1
GATA3
FAM131B
PKNOX2
CCDC43
CFAP410
KLF6
HOXB6
RPS10-NUDT3
RPS10
PAX3
LRRC4B
MLIP
GCNT1
MAB21L2
TCHP
PPM1B
EXOC6B
PAPPA
ALPI
INSM1
CCDC85A
DAPL1
PANK2
EBF2
RARA
ARHGAP24
TPRA1
MCM2
CUEDC1
KCNJ5
TPM1
RNF138
LIMCH1
DACH1
CHD8
TPCN2
FAM222A
FABP7
SEPHS1
TMEM132C
NUDT10
NEUROD1
SLC2A9
AXIN2
RGSL1
TMEM70
ELOC
ATPAF1
TEX38
C6orf132
PSMB5
ZNF746
TMEM120B
PROX1
C8B
EPHA5
OR10AC1
KHDRBS1
CXCL12
JCAD
EYS
KIAA1522
LRRC4
MAPK8
OR13A1
MUSTN1
ITIH4
NABP1
CCIN
CCDC169-SOHLH2
CCDC169
ADAMTS15
LARP7
GYPC
FXYD2
QPRT
DSCAML1
HEBP1
HOXA1
FGF19
CDK5R1
USP17L21
USP17L20
USP17L12
USP17L22
PLCH1
ITPK1
PRSS23
SERTAD3
KRT16
ABCB5
ZFHX3
FBXO46
MEIOSIN
RSPO4
FAM162A
CCDC58
PCDH18
LRGUK
VAMP8
VAMP5
PGLYRP1
IGFL4
CLMP
WASHC3
MPZL2
LIN28A
SLC7A5
USP17L13
USP17L17
USP17L15
MTCH2
RFX6
CYP26A1
MBNL1
KRTAP3-2
KRTAP3-1
UBR2
NPEPL1
CBX4
ZNF341
CRYM
ZNF703
KCNN2
MAFA
FBLN2
CA6
RAB11FIP1
DTNB
LOXL4
EIF2S1
ATP6V1D
SPDYA
EMP3
CCDC114
THEG
ID2
SHMT2
ASIP
DNTT
NFE2
SREBF1
CLDN2
SYT7
SH2B1
DSP
GPR20
SLC12A9
EPHB4
ADO
EVPL
MCC
BBS9
ID3
FOXP2
CYP51A1
SMAD7
BRINP1
RUNX1T1
CITED2
ADM
KDM3A
LRRC10B
DST
CLDN3
TESC
MKNK2
SOX12
TRIM2
TOMM34
STK4
CERS6
LRAT
OAS1
NRARP
LSM14B
TRDMT1
NUTM2D
ARID3C
DCTN3
MSI2
MYC
IRS2
PPP1R3B
GABRR1
ZGRF1
KAT6B
SALL4
CCNI
ACSM6
ASB6
OCLN
CD99L2
CDC20
EOMES
ZMAT4
MRPL34
DDA1
ABHD8
LIMS1
ABCA5
BHLHE23
KDM6B
NEDD9
PACSIN2
ELF1
WBP4
RNF24
ANO4
TBC1D10A
TMEM114
CLDN11
KMT2A
EFNA5
MPP4
TMEM107
ANK2
REC8
SALL1
NPHS1
CD36
APLP1
KIRREL2
RARB
ZNF214
NLRP14
HEYL
UNCX
FREM1
COL17A1
C8orf34
VENTX
XIAP
KCNH1
UTF1
SLC10A2
TP53BP1
MAP1A
HHIPL2
LEUTX
BMPR1B
PKD1
PEPD
PAX8
ARID5B
CYREN
CBX7
PPFIBP2
LRRC45
CENPX
SRGAP2C
FAM72B
ANAPC4
CENPBD1
TCF20
DHX32
RASL10A
GAS2L1
ERCC1
RASL11B
STARD4
RCOR3
SCGB1A1
ERLIN2
ATP1A4
CEMP1
PDPK1
FRMD7
CATSPERG
BAZ2B
TBL1XR1
CDK15
GBX2
SSH1
RAB24
PRELID1
MXD3
FTL
BAX
ARHGEF10
TLE4
SIPA1
ASS1
RXYLT1
PTGR1
GAS8
PTPRD
SOCS3
TRPM3
CD9
FAM178B
LPIN1
MAGEA11
NRG1
OR8J1
SHOX2
RSRC1
PRICKLE1
RPRM
CSTF2T
MRGPRE
CSNK2A2
IFT74
PHC2
TLE1
KIF16B
KRT20
C3orf52
OXER1
C7
BTRC
MRPL3
ZFHX4
NPAS4
SERPING1
CER1
PLA2G2A
RBM20
ARID3A
TARS1
H1-3
H4C7
H4C6
DNAJC25-GNG10
DNAJC25
BTBD10
GNAI1
MSGN1
ZIC3
ERRFI1
HRK
PPP1R35
HOXC6
HOXC5
ZCWPW1
MEPCE
TFDP2
STX3
HOXA5
ZFP36L2
HOXA6
RNF220
CBX5
CHODL
BRWD1
PLEKHA5
CST6
RNF38
ECM2
CATSPER1
ZNF76
AHSP
TMEM198
CHPF
MLEC
AHDC1
DEFB106B
DEFB106A
DEFB105B
DEFB105A
DEFB104B
DEFB104A
RCOR2
NOTUM
CPA2
DLL3
PRDX6
PRTG
STAG2
SLC39A8
SLC45A3
TWIST1
EAPP
PPP2R2C
ZNF474
ZSWIM1
SPATA25
NEURL2
CTSA
SPRY4
TP53I11
GXYLT2
MVB12A
BST2
TAGLN3
EPHA1
RBFOX2
DDX46
DMAP1
MGST1
NFIX
CEP97
ADAMTS19
WNT5B
CTBP2
STRADA
NAV1
RCN1
MNT
FGF8
DUSP12
PEX14
DFFA
SPIN1
PLEKHA6
CCNDBP1
TLN1
CREB3
GPR62
REST
CGGBP1
BAK1
ACOX2
RFFL
C3orf38
RGS3
GNAI2
SF3A3
FHL3
KRTAP4-12
KRTAP4-11
INHBE
GLI1
KLHL15
IFI16
PYDC5
ADAMTS18
OTUD7B
CASC3
BCAT2
DUSP4
CXXC4
KSR1
NDUFS7
AMD1
LHX2
CAST
SOX6
ZBTB45
MYL7
TRIM28
GCK
ENPP3
TPST2
GPX3
PIM1
ATXN7
STRA6
TUBB2A
DRAP1
C11orf68
ARHGEF38
TRIP12
FBXO36
PCF11
CABP7
ABHD2
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
ID1
SOAT2
IGFBP6
SP2
DHRS3
ARID3B
SPATC1L
UNKL
C16orf91
G6PC2
IER3
FLOT1
H2BU1
H2AW
ZNF775
MUC20
DPP9
TBL2
USP29
GPR108
BHLHE40