ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584302 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◣ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
SP5
RABL2A
DUX4
POLR3F
DZANK1
MBTPS1
ZNF503
MAPKAPK5
LEFTY2
DUSP29
CACTIN
NUP85
NME6
LOC102724770
DGCR6
PSMG2
CEP76
HSPA9
IPO13
NVL
PSMD1
POLR2E
GPX4
TAOK3
SUDS3
RWDD1
PHOX2B
NEUROG2
LARP7
VDAC2
C19orf48
DYNC1LI2
SLC35B1
NDUFA4
EXOSC5
BCKDHA
ZNF576
IRGQ
TSN
FARSB
DCTN1
TBCK
AIMP1
GOSR2
VTI1B
UPF2
FAM187A
EFTUD2
CCDC103
RPL21
NUP205
PMAIP1
ANAPC7
REXO1
ATP5MG
S1PR4
NCLN
ACTR10
PALM2AKAP2
NNAT
BLCAP
CAPRIN1
NR2F1
STAM
MRPS7
MIF4GD
GGA3
SEC61B
ALG2
PNO1
HADHB
HADHA
SKP1
STAM2
MSX1
RPL35A
IQCG
LMLN
DPH6
PI4KB
GRSF1
PES1
TMED1
COX7A2L
CNTN1
SRD5A1
SMC6
GEN1
PAK1IP1
C6orf52
GOLGA5
ZP4
RBKS
BABAM2
TSNAX
LYRM4
FARS2
TTC8
RBBP5
FRG2C
UBE2I
MRPS5
SART3
ISCU
PSMD12
ICE1
UFM1
TCF7L2
PCBP1
PDAP1
BUD31
PAF1
RPS12
RPS23
ATP6AP1L
SF3B3
COG4
USP1
RPS27A
CLHC1
SMC2
PROSER1
NHLRC3
FAM104A
C17orf80
ZRANB2
SELENOF
HS2ST1
SUPV3L1
VARS1
PPP1R1B
CDH18
RABGGTB
KANK4
TM9SF1
IPO4
TSSK4
SFI1
EIF4ENIF1
ARHGAP10
PRRX1
CHRND
PRSS56
GRIP1
ICMT
HES3
ADK
AP3M1
C6orf47
APOM
BAG6
MBNL1
HSPA1B
PIN4
NEUROG3
PTGES2
FRG2
PIP4P1
OSGEP
APEX1
SPECC1
BICRA
DNAJB7
XPNPEP3
ST13
NFKBIL1
DDX39B
ATP6V1G2
ECEL1
NHS
ALDH1A2
STK36
RNF25
HES7
ALOXE3
OR2L13
OR2AJ1
FMNL2
PAX6
SIX1
COMMD1
CCT4
RPS29
LRR1
CCDC33
GATA6
MESP1
OR6B2
NDUFA10
MBNL3
FBXL18
ACTB
PDE6B
TTC13
MSGN1
EXT1
ARF1
LZTS1
OAZ3
MRPL9
SUCLG1
NEUROG1
ATOH1
PDZD2
PTPRB
ID2
ADGRL2
H2BC17
H2AC17
H3C12
GADD45GIP1
DEFB106B
DEFB106A
DEFB105B
DEFB105A
DEFB104B
DEFB104A
GLRA1
OTX1
FOXP4
TLE3
ABLIM3
TMEM212
CDX1
ARHGAP11A-SCG5
ARHGAP11A
SERINC5
TAF9
RAD17
AK6
GADD45G
ZGPAT
ARFRP1
FOXB1
ZFHX2
EOLA2
CERS6
KHDRBS1
CR1L
ZNF608
ZSWIM6
MUC12
MYC
UNC5A
RPL7
RDH10
ZNF585B
ZNF383
SLAMF8
SEC11C
FOXA2
STK38L
MAGIX
URM1
SLC39A8
ID3
STK38
CNPY2
HOXA3
HOXA4
KRT20
IRX5
KCNJ5
IGFBP2
SRCIN1
SLC39A7
RXRB
HSD17B8
COL11A2
RING1
PBX3
POU3F2
TMPPE
GLB1
LYPD6B
RPN1
NEBL
EIF2S3
SHMT2
CDC73
GDNF
SP8
EBP
MRTO4
EMC1
CHODL
CCDC200
PDHX
APIP
HOXB3
CLGN
HOXB4
HNRNPA3
HOXB2
ANKLE2
KLF17
SMPD1
KLHL25
PITX2
CPSF4L
CDC42EP2
APBA1
COQ3
CDON
HOXB1
NAV3
SCN2A
SKIL
TBX3
MSX2
GPR78
VENTX
UTF1
CADM3
HOXD3
HOXD4
ETS1
PFKP
CACNA1D
BNIP2
KCNH1
RFX2
GAD2
NKD1
DKK1
GTF3C4
DDX31
NRXN2
USP17L21
USP17L20
USP17L12
USP17L22
PDPN
ST18
GSPT1
HOXA1
HOXA2
SNCG
MMRN2
GORAB
USP17L13
USP17L11
USP17L18
USP17L10
KDM2B
COLCA2
GIMAP5
CBX4
KRT74
TLE2
NKX2-2
IPO8
PDE12
EYA1
MEIS3
LRATD2
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
PTGES3
METTL11B
ZNF746
USP17L17
USP17L19
PAX2
FOSB
NFE2
USP17L15
FGFR2
CSTF2T
SOST
H2BU1
H2AW
ASIP
OR13A1
ALKBH5
FTL
BAX
SP7
NR4A2
GATA3
MEIS2
LRGUK
PSMB5
DMBX1
SYBU
CBFA2T2
RPS24
POLR3A
PAX8
ATP1A4
ITGB5
DDAH1
TPRA1
MCM2
CCN1
PRUNE2
FABP7
HERPUD1
MPP4
OLFML2A
NR6A1
LIFR
WASHC3
CTXN3
SPCS1
GLT8D1
UQCC2
CLDN9
TMEM123
CLDN6
AEN
CCDC9
FAM3C
BUB1
TTYH1
DEFA5
REC8
CWC22
FKBP1A
CPN2
DPEP1
HES1
CHN2
CPVL
CCDC85A
TMEM107
ECM2
AGO1
PRICKLE1
UNC5C
CDT1
PIEZO1
FXYD2
DSCAML1
MYRIP
LZTFL1
FGF2
PCBD2
KCNN2
PPM1B
EML4
CERCAM
HAO1
LEF1
SH2D3C
RAB11FIP1
TMEM120B
RBFOX2
ABCA5
NECTIN1
WNT1
VOPP1
MSI2
FOXB2
DLL4
ADNP2
MN1
HAPLN1
EIF2S1
ATP6V1D
GPR20
ADO
MVB12A
BST2
EVX1
CDK15
THEG
MTRNR2L1
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
ID1
SOAT2
IGFBP6
CDX2
SP2
EAPP
DHRS3
RARA
ARID3B
SPATC1L
CYP26A1
VEZT
FGD6
SNAPC1
FZD8
UNKL
C16orf91
PLAGL1
G6PC2
IER3
FLOT1
DUSP6
NDUFS7
NEUROD1
ZSWIM1
SPATA25
NEURL2
ZNF775
MUC20
KCNN4
SH2B1
KAT6B
DPP9
TLE4
TBL2
CTSA
ERCC1
ZFHX4
BNIP3
USP29
GPR108
TPM1
BHLHE40
TRIM65
BBS9
PCGF1
TRIP10
LBX1
AQP6
MRPL38
FOXP1
ERRFI1
LBX2
VSIR
WDR74
STX5
MAMDC2
TTI2
METTL24
LIN28A
RUNX1T1
HOXA5
ARHGDIA
PHC2
INSM1
ASB2
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
FAM222A
TAF12
LPIN1
DNM2
MLEC
DAPL1
ARHGAP24
ARID3C
FGF19
PAH
CITED2
SP1
TBX2
COL23A1
S100A10
FBXO31
NPAS4
RHBDD3
EWSR1
NCOA7
HOXC4
MINDY2
HPD
TNFRSF19
MAP1LC3B
HUS1
SYTL3
CS
CRABP2
PPP6R3
FILIP1L
ANKRD28
DCTN3
RPS10-NUDT3
RPS10
TMEM70
ELOC
UNCX
SYNPO
PDE4D
EXOC2
XKR7
FRA10AC1
PDHB
CALCOCO1
RPL22
RNF207
RAB5B
PMEL
CDK2
HPCAL1
AXDND1
E4F1
SMAD3
KIF21B
CCNDBP1
ZFHX3
ANK2
MRPL34
DDA1
ABHD8
PKDCC
NFIA
BAZ2A
STX18
ARHGEF28
HOXC6
KDM6B
CAMTA1
FRYL
TLE1
STAP2
ITGB6
KANSL3
FER1L5
OTUD7B
ARSG
TMEM242
DLX4
BAIAP2
VIP
PPFIBP2
DYNLT1
DONSON
DOLPP1
GPC6
ARRDC4
ASB6
PDZRN3
PGK1
ATP5F1B
SEPTIN9
ATF6
MAB21L2
ETAA1
FOXP2
POR
CERK
POP5
RBPJ
SIRT4
EXOSC4
SH3BP2
JUP
NELFA
MFSD10
UPF3A
SMPDL3A
ARHGAP22
MRPL20
PPCDC
RARG
PC
NINJ2
RHBDD1
BCL3
KATNB1
QPRT
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TMEM101
TRIB1
CCDC174
MYLK4
SRSF11
ABHD2
CCNL2
ABCC10
IRF2BP2
SREBF1
ADAP1
ZNF687
SMARCD2
BMF
RFX1
CLCN3
SMIM28
MTMR4
LFNG
TMEM9
SMG6
KAZALD1
GATA4
ATP1A1
MALRD1
DACT2
GPCPD1
NBPF1
ZFP36
PLEKHG2
CNOT2
CBX5
MIDEAS
MRPL3
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
NRL
C9orf92
ZNF367
PCGF2
RNF34
TOP2A
PRKAG2
CALM2
RASSF5
SLC2A9
SPG7
PSPN
ALKBH7
TLX2
SOCS3
NOL4L
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
PPP1R18
NRM
MRPS31
HNRNPA2B1
CBX3
LRRC40
FURIN
NUBP1
THOP1
SGTA
SACM1L
RABGAP1L
KAT7
DLG2
TRAF7
ANGPTL4
DLC1
RHOQ
ATP6V1E2
PCNA
ITGAV
RPL34
STAT1
CRYAA2
CRYAA
BAHCC1
NFKBIA
NOTCH2
RPLP1
ASXL3
ARHGAP30
IQSEC3
RAB26
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
HNMT
DNAH1
DCAF11
ZFAND2A
PDE4DIP
TRIM26
SSBP4
ZNF740
CSAD
PXYLP1
PRDM10
CDS2
ARRDC2
ASCL1
GTF3A
OSBP
NLK
GRIK2
ATP1B1
SHF
EIF2AK3
SKI
ZNF77
IL17RD
STIP1
RPS7
CSF3R
HMGCS1
PSMD6
SOD2
AHDC1
SERPINE1
STARD13
CLDN11
ART1
TCP10L
TRIM7
HAND1
RGS3
SLC25A25
SEPTIN4
ZC3H3
RAB37
ECE1
MDM2
SLC45A4
RAB11B
CAPG
ME3
KNL1
BRMS1
RBBP7
ACYP1
CAPNS2
TRIB3
GADD45A
G3BP1
ZNF564
MYBPC3
LPCAT3
KMT5A
IKBKB
NCOA2
BORCS6
EVI5L
GOT1
SPRED2
KDM8
RTN4
PIPOX
MACROH2A1
CCL26
EMP3
SOCS2
ELL
SH2D6
RGS12
HNRNPD
LMO4
RBM15
STX1A
TNFAIP2
POLG
METRN
COL21A1
CTSW
ADM
SLC35E2B
FAM107B
SMIM20
PDP2
TPCN1
TCTEX1D4
SLC7A5
PLK3
BTBD19
CRLS1
ZNF827
SYNJ2
B4GAT1
SCGB1A1
METTL3
LIG3
LMOD1
EVA1A
CORO1A
HTR1F
MTF2
MBD6
DDIT3
MIDN
PNKD
MNT
MYEOV
ZC2HC1C
KBTBD11
MOB3A
IZUMO4
TRIM2
GLRX5
ANTKMT
NEK1
CP
PKN2
FST
DAGLB
JUNB
GMEB2
WSB2
SLC6A12
SCHIP1
LCK
FAM167B
TMEM94
PYGL
CSNK1D
NAIF1
PLA2G2A
BFSP1
TUBA1C
SEC22B
CNKSR3
IFI16
ARHGEF3
UBE2F
CCDC43
SHB
ETF1
ARAP1
KDM3A
INAVA
SORL1
NCDN
KIAA0319L
PRMT5
NEK3
MRPS28
EIF3D
TLN1
SLC30A4
CREB3
ARID5A
NKX1-1
IGFBP7
CNPY3
TESC
MPND
NAV2
SH3YL1
ACP1
FLAD1
CKS1B
SLC19A1
KIAA1549
ABCA4
SH3BP1
FOXA3
PCM1
SCARB1
BCAR3
DIABLO
PPFIBP1
CMSS1
TACC1
TXNRD1
SPOCK2
LINGO1
ARID4A
SORBS2
KLF16
FGR
LMNA
ZBTB18
SIT1
H4C15
H4C14
H3C15
H3C14
NAGLU
PLEC
UBC
LRRC45
CENPX
CYP51A1
COX5A
MRS2
SERPINB1
RGS5
RIMKLB
MMD
RNF144A
HNRNPL
METTL26
ENPP3
PGP
SEC14L1
NRCAM
LRCH4
FBXO24
LNPEP
INKA2
MYO1B