ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX4671298 | NAMEC8
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◣ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

MTRNR2L1
DUX4
EAPP
CCDC200
WDR74
STX5
FRG2C
POLDIP3
TMEM242
SHF
FOLR1
ID1
SDC4
TMEM107
STX16
KNL1
ZNFX1
AFAP1
ALLC
TAF12
SNAPC1
PRMT5
STAT6
UBE2V1
AVPI1
SPAAR
HRCT1
EIF4A3
JUNB
HMGCR
YJU2
SRSF6
ART1
ANP32E
MT1E
MT1M
BBS1
FRG2
TTI2
MTRNR2L8
MPZL1
FUS
TTC12
BORCS6
C8orf37
PITRM1
ADAMTS9
PHC2
RAB13
RPS27
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
FLYWCH1
PCGF2
SNAI1
CFAP45
SF3A3
ITGB2
LDHA
NDUFAF5
ESF1
SIRT4
CASC3
HMGB1
USPL1
BAIAP2
EIF4A2
LRFN3
PARP16
PPEF1
BTG1
RS1
ASIP
SLC38A2
TMEM259
CNN2
MTRNR2L2
MSH3
DHFR
UGP2
DCP1A
H4C12
H4C11
H2BC15
H2AC15
MRPL39
ZSCAN22
NUDCD1
TRIB1
CDK5RAP1
VPS52
RPS18
B3GALT4
FCGR3A
FBXW11
BRMS1
B4GAT1
POLR3E
MAT2A
LUC7L
FAM234A
NUDT4
STX18
SMG6
DDIT4
SRSF2
MFSD11
CTNNBL1
GDPD5
COL23A1
H4C8
BZW2
ANKMY2
NDUFS7
PRMT9
ALDH3A1
ZNF219
TMEM253
NME1-NME2
NME1
TSG101
CDK13
LPIN3
PLXDC1
MRPS31
SACM1L
HNRNPD
UBAC1
TVP23B
MTF2
CBFA2T2
HSPA6
SLC3A2
TEX46
KDM1A
NDUFAF1
PLK2
PKM
MNAT1
CLDN15
FIS1
WDR36
NFKBIZ
AAR2
MRI1
C19orf53
GTF3C3
C2orf66
HNRNPH1
ATOX1
RPS29
TSEN15
SRSF5
EXOSC6
OSGIN1
GSTA4
TOB2
FAM180B
NDUFS3
KBTBD4
RPS6
PTPN1
LRRC59
TMEM190
TMEM238
RPL28
RBM18
MRRF
GMNN
RSRP1
SOST
BCAR3
TFIP11
LUC7L2
DHX8
FMC1-LUC7L2
FMC1
TRA2B
SRP14
USP45
TSTD3
NCOA5
MAMDC2
PDCD6IP
RALGAPB
NCOA7
CRYAA2
CRYAA
SYT8
TMEM248
AP3S2
SCAND1
MYBL2
ABLIM3
PARK7
MT2A
HNF4A
NHLRC1
PCLAF
TRIP4
MRM3
GLOD4
UBB
MRPL17
MRPS15
ICE2
H4C3
H1-6
MRPL40
HIRA
SRSF7
UCN3
DPP9
TATDN1
NDUFB9
MDM4
DPAGT1
H2AX
HMBS
SLC44A1
TTPAL
ATP5IF1
CALM2
NAGK
PRDX1
SLC35F5
ARL4D
AGK
TOMM5
SIT1
CCDC107
ARHGEF39
ATF1
NUP107
SAMM50
AARSD1
POLR2C
RXFP4
KHDC4
NCOA3
RAB11A
NFE2L2
MAK16
SOX13
NDUFC2-KCTD14
NDUFC2
P4HA1
COMMD2
EBAG9
ZNF518A
VTA1
NMBR
ZNF721
PIGG
DDX19A
SAR1B
ASPG
ZMPSTE24
H2BC14
H2AC14
GOSR1
GPR89A
LRBA
SLC12A6
NUTM1
NOP10
SNRPB2
CDKN2AIPNL
PRMT2
WASHC5
NSMCE2
B2M
IFT52
RPL37
CARD6
SNX30
CCDC174
CAAP1
SECISBP2
CKS2
HDAC4
NBPF1
KDM8
G3BP1
MFAP3
FAM114A2
NR1H3
ACP2
TRMO
VPS33A
FAN1
RPS15
CLK1
EID1
DYNC2I1
ZNF326
SSBP1
PIGBOS1
PIGB
RARS1
TRMT61B
FSIP2
CCDC66
TAF5
ZNF335
RABL2B
RABL2A
PSMD1
RWDD1
MAPKAPK5
TAOK3
SUDS3
NME6
CACTIN
NUP85
POLR3F
DZANK1
FAM187A
EFTUD2
CCDC103
NVL
IPO13
DYNC1LI2
POLR2E
GPX4
VDAC2
HSPA9
GOSR2
VTI1B
PSMG2
CEP76
NUP205
MRPS7
MIF4GD
GGA3
HADHB
HADHA
RPL21
S1PR4
REXO1
NCLN
TBCK
AIMP1
EXOSC5
BCKDHA
C19orf48
NNAT
BLCAP
DCTN1
TSNAX
STAM
ATP5MG
SLC35B1
TSN
STAM2
SEC61B
ALG2
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
PNO1
PES1
PAK1IP1
C6orf52
RBBP5
UPF2
SKP1
ZNF576
IRGQ
NDUFA4
LOC102724770
DGCR6
ZNF503
COX7A2L
CAPRIN1
SART3
ISCU
ACTR10
RBKS
BABAM2
ZRANB2
DPH6
TTC8
GOLGA5
SUPV3L1
RPL35A
IQCG
VARS1
PI4KB
LMLN
TMED1
RPS23
ATP6AP1L
RPS12
SMC2
ANAPC7
MRPS5
FAM104A
C17orf80
SELENOF
HS2ST1
RABGGTB
PCBP1
USP1
PDAP1
BUD31
HSPA1B
SFI1
EIF4ENIF1
UFM1
ADK
DNAJB7
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
C6orf47
APOM
BAG6
PROSER1
NHLRC3
PIP4P1
COMMD1
OSGEP
APEX1
CCT4
SF3B3
COG4
PAF1
TM9SF1
IPO4
NEUROG2
TSSK4
NFKBIL1
DDX39B
ATP6V1G2
ZGPAT
ARFRP1
PPP1R1B
PDE6B
RARB
LRR1
NEUROG3
PTGES2
HES1
HOXA3
ZNF608
PIN4
OR6B2
NDUFA10
SUCLG1
OAZ3
MRPL9
UBE2I
ARF1
ICMT
HES3
HOXA4
PDE12
WNT1
HOXA1
DUSP29
SOAT2
IGFBP6
ARHGAP11A-SCG5
ARHGAP11A
CDX2
TAF9
RAD17
AK6
STK36
RNF25
SP2
MBTPS1
MRTO4
EMC1
SKIL
DHRS3
RARA
ARID3B
GLRA1
LARP7
SPATC1L
BICRA
CYP26A1
VEZT
FGD6
FZD8
UNKL
ID2
ARHGAP10
SEC11C
RPL7
RDH10
EIF2S3
GADD45GIP1
CDC73
NFE2
SYBU
NR2F1
C16orf91
PLAGL1
PMAIP1
G6PC2
IER3
FLOT1
CCDC33
HOXA2
PALM2AKAP2
H2BU1
H2AW
DUSP6
RPN1
GORAB
NEUROD1
ZSWIM1
SPATA25
NEURL2
GTF3C4
DDX31
ZNF775
MUC20
ZP4
SERINC5
KCNN4
NEUROG1
SH2B1
ATOH1
RAB11FIP1
KAT6B
CNPY2
IGFBP2
LZTS1
TLE4
TBL2
CTSA
ERCC1
ZFHX4
BNIP3
USP29
GPR108
TPM1
BHLHE40
TLE3
TRIM65
ZNF585B
ZNF383
LEFTY2
BBS9
PCGF1
TRIP10
LBX1
AQP6
CDH18
MRPL38
SPCS1
GLT8D1
PDHX
APIP
FOXP1
ERRFI1
DDAH1
LBX2
VSIR
PHOX2B
HOXB1
METTL24
LIN28A
ST18
RUNX1T1
HOXA5
TBX3
ARHGDIA
TLE2
INSM1
ASB2
ETS1
ZNF746
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
FAM222A
PCBD2
LPIN1
DNM2
MLEC
DAPL1
ARHGAP24
ARID3C
FGF19
TPRA1
PAH
MCM2
CITED2
SP1
SLC39A7
RXRB
HSD17B8
TBX2
ANKLE2
HOXB3
ALKBH5
NHS
S100A10
URM1
FBXO31
NPAS4
DLL4
RHBDD3
EWSR1
ADNP2
HOXC4
MINDY2
HPD
SP5
PRUNE2
TNFRSF19
MAP1LC3B
HUS1
SYTL3
CS
CRABP2
PPP6R3
FILIP1L
ANKRD28
DCTN3
H2BC17
H2AC17
RPS10-NUDT3
RPS10
COL11A2
TMEM70
ELOC
UNCX
SYNPO
CCN1
PDE4D
EXOC2
XKR7
FRA10AC1
PDHB
CALCOCO1
RPL22
RNF207
RAB5B
PMEL
CDK2
FXYD2
HPCAL1
AXDND1
E4F1
SMAD3
CNTN1
KIF21B
CCNDBP1
ZFHX3
ANK2
MRPL34
DDA1
ABHD8
PKDCC
NFIA
BAZ2A
CLGN
ARHGEF28
CHN2
HOXC6
FABP7
KDM6B
CAMTA1
FRYL
TLE1
STAP2
ITGB6
ID3
CPVL
KANSL3
FER1L5
OTUD7B
TMEM120B
ARSG
DLX4
VIP
PPFIBP2
DYNLT1
DONSON
DOLPP1
GPC6
KDM2B
ARRDC4
ASB6
RPS24
POLR3A
PDZRN3
PGK1
ATP5F1B
SEPTIN9
ATF6
CERCAM
MAB21L2
ETAA1
FOXP2
POR
CERK
POP5
RBPJ
CADM3
MSX1
EXOSC4
SH3BP2
JUP
NELFA
MFSD10
UPF3A
PRRX1
SMPDL3A
ARHGAP22
MRPL20
PPCDC
RARG
PC
NINJ2
RHBDD1
BCL3
KATNB1
QPRT
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TMEM101
RING1
MYLK4
MEIS2
SRSF11
ABHD2
CCNL2
ABCC10
IRF2BP2
SREBF1
MBNL3
ADAP1
ZNF687
SMARCD2
BMF
RFX1
CLCN3
SMIM28
MTMR4
LFNG
TMEM9
KAZALD1
GATA4
ATP1A1
MALRD1
DACT2
GPCPD1
ZFP36
PLEKHG2
CNOT2
CBX5
MIDEAS
MRPL3
USP17L21
USP17L20
USP17L12
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
NRL
C9orf92
ZNF367
RNF34
TOP2A
PRKAG2
RASSF5
SLC2A9
SPG7
PSPN
ALKBH7
TLX2
SOCS3
NOL4L
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
PPP1R18
NRM
HNRNPA2B1
CBX3
LRRC40
FURIN
NUBP1
THOP1
SGTA
RABGAP1L
KAT7
DLG2
TRAF7
ANGPTL4
DLC1
USP17L22
RHOQ
ATP6V1E2
PCNA
ITGAV
RPL34
ECEL1
STAT1
BAHCC1
NFKBIA
NOTCH2
RPLP1
ASXL3
ARHGAP30
IQSEC3
RAB26
NR2F6
RNF103-CHMP3
RMND5A
HNMT
DNAH1
DCAF11
ZFAND2A
PDE4DIP
TRIM26
SSBP4
ZNF740
CSAD
PXYLP1
PRDM10
NAV3
CDS2
ARRDC2
ASCL1
GTF3A
OSBP
NLK
GRIK2
ATP1B1
GPR20
EIF2AK3
SKI
ZNF77
IL17RD
STIP1
RPS7
CSF3R
HMGCS1
PSMD6
SOD2
AHDC1
SERPINE1
LRATD2
STARD13
CLDN11
DSCAML1
TCP10L
TRIM7
HAND1
RGS3
SLC25A25
SEPTIN4
ZC3H3
RAB37
ECE1
MDM2
GADD45G
SLC45A4
RAB11B
CAPG
ME3
RBBP7
AGO1
ACYP1
CAPNS2
TRIB3
GADD45A
ZNF564
MYBPC3
LPCAT3
KMT5A
IKBKB
NCOA2
HOXB4
EVI5L
GOT1
SPRED2
RTN4
PIPOX
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
MACROH2A1
CCL26
EMP3
FTL
SOCS2
ELL
SH2D6
CBX4
RGS12
LMO4
RBM15
STX1A
TNFAIP2
POLG
METRN
COL21A1
CTSW
ADM
SLC35E2B
FAM107B
SMIM20
PDP2
TPCN1
TCTEX1D4
SLC7A5
PLK3
BTBD19
CRLS1
ZNF827
SYNJ2
GRSF1
SCGB1A1
METTL3
LIG3
LMOD1
EVA1A
CORO1A
TCF7L2
HTR1F
MYRIP
MBD6
DDIT3
MIDN
PNKD
METTL11B
RBFOX2
MNT
MYEOV
ZC2HC1C
CPSF4L
KBTBD11
MOB3A
IZUMO4
TRIM2
MSX2
GLRX5
ANTKMT
NEK1
CP
CLDN9
PKN2
FST
DAGLB
RFX2
GMEB2
WSB2
SLC6A12
SCHIP1
HOXD3
LCK
FAM167B
TMEM94
PYGL
CSNK1D
NAIF1
PLA2G2A
BFSP1
TUBA1C
SEC22B
CNKSR3
IFI16