ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584310 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◣ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

PSMD1
ZNF335
RABL2A
NME6
DUX4
RABL2B
NUP85
CACTIN
MAPKAPK5
IPO13
VDAC2
VTI1B
POLR3F
DZANK1
NVL
HSPA9
PSMG2
CEP76
TAOK3
SUDS3
DYNC1LI2
FAM187A
EFTUD2
CCDC103
GOSR2
RWDD1
NUP205
LYRM4
FARS2
TBCK
AIMP1
SRD5A1
RPL21
NNAT
BLCAP
REXO1
HADHB
HADHA
EXOSC5
BCKDHA
POLR2E
GPX4
MRPS7
MIF4GD
GGA3
STAM
C19orf48
PES1
WNT1
STAM2
S1PR4
NCLN
ARF1
FRG2C
UPF2
ATP5MG
LOC102724770
DGCR6
DCTN1
SKP1
ANAPC7
FARSB
TSNAX
ZNF576
IRGQ
TSN
SART3
ISCU
PNO1
TTC8
ZRANB2
SEC61B
ALG2
COX7A2L
RABGGTB
PDAP1
BUD31
DNAJB7
XPNPEP3
ST13
ZNF503
CAPRIN1
SMC2
PCBP1
SF3B3
COG4
G6PC2
TMED1
VARS1
HOXA3
HOXA4
PI4KB
RBBP5
FABP7
SMPDL3A
NDUFA4
ACTR10
RPL35A
IQCG
LMLN
PROSER1
NHLRC3
RPS27A
CLHC1
RPS23
ATP6AP1L
SELENOF
HS2ST1
GOLGA5
FZD8
SFI1
EIF4ENIF1
SLC35B1
DPH6
LBX1
PSMD12
UFM1
PIP4P1
OSGEP
APEX1
ZFHX4
PLAGL1
SERINC5
PAK1IP1
C6orf52
ADK
AP3M1
HSPA1B
MRPS5
FGF19
ZNF608
RPS12
ANK2
NFKBIL1
DDX39B
ATP6V1G2
RBKS
BABAM2
SUPV3L1
RHBDD3
EWSR1
C6orf47
APOM
BAG6
ARHGAP24
USP1
PARP11
DMRT3
PPP1R1B
NEUROG2
FAM104A
C17orf80
ICMT
HES3
ABCG2
RAB11FIP1
ICE1
ETS1
ARHGAP11A-SCG5
ARHGAP11A
TLE1
TM9SF1
IPO4
TSSK4
ITGB6
FOXP2
RPS29
LRR1
TMEM120B
MYLK4
DBX1
CALCOCO1
PTGES2
SOGA3
ADNP2
SUCLG1
TLE4
EVA1A
LAMA4
LRATD2
NCOR2
MUC20
PALM2AKAP2
NFIA
MRPL3
FOXB2
PCDH11Y
COMMD1
CCT4
C5orf63
CBFA2T2
NOTCH2
PDE1B
LHFPL2
IRF2BP2
TMEM14A
UNKL
C16orf91
PIN4
ARID3C
DCTN3
KBTBD8
OR6B2
NDUFA10
FRG2
GRIK2
PAF1
SYNPO
SEC22B
RPL7
RDH10
TRIM71
ATOH1
PDZRN3
PDHB
PRUNE2
BNIP3
BRINP1
KITLG
MSX1
METTL11B
PRDM13
MYH2
TPM1
SCGB1A1
WT1
DIO2
HES1
CABP7
PIM1
RGS12
VEZT
FGD6
NEK7
FOXD3
MBTPS1
PIPOX
RND3
TRABD2B
DDAH1
CCN1
PRDM12
LRIG3
TMEM107
KCNK16
TMEM275
VIP
ASXL3
PDHX
APIP
LRAT
CITED2
ARHGAP22
MRTO4
EMC1
NR2F1
RPL34
FRMD7
MEIS2
SPTBN1
GLRA1
USP17L21
USP17L20
USP17L12
USP17L22
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
CD69
TPO
SH3BP5
PGLYRP1
IGFL4
NEUROD1
DAPL1
SNAPC1
DTX4
VGLL4
TAF9
RAD17
AK6
SMURF1
STK36
RNF25
IGFBP2
AGPAT3
ID2
CLDN11
RIMKLB
CLEC19A
HOXD3
OAZ3
MRPL9
CEP41
CDX2
SYNGR4
ERRFI1
CERCAM
ZCCHC13
HSPA6
EIF2S3
GALNT14
ACSS3
HOXB3
HOXB4
SOX21
ME3
AGMO
COL17A1
MOB3B
C10orf90
FHL1
RBP3
PDE6B
PDE4DIP
SPACA1
SEMA4D
ALDH1A2
NRARP
GORAB
OTUD6A
AWAT2
PMAIP1
CTXN3
ID1
B3GALT2
NEBL
GMPR
GPR176
TRMT9B
RARB
LARP7
GNAS
MAP1B
RAI14
NEUROG3
UNCX
PIGX
CEP19
KLHDC8A
ATOH8
BECN2
DHRS3
SEC11C
NMNAT2
CACNA1D
SMARCA2
CCDC88C
EVX2
LIMK2
KIF21B
VAV3
MAD2L1BP
RSPH9
CETN1
FAM222A
MXI1
LZTS1
TEX2
KCNK10
PRRX1
GAS7
RIC8B
HOXD4
FMNL2
HPS1
IL17B
TPRA1
MCM2
GUCY2C
PDE12
NECTIN1
HOXA1
HOXA2
BAIAP2
RPS13
NTM
URM1
CCDC200
SLC7A5
JAKMIP1
TLE3
PPP1R12B
CCDC198
PKHD1
ZGPAT
ARFRP1
CEBPA
SKIL
RARA
CNPY2
POP5
HMX2
BUB3
SPIRE1
ACVR1
C1orf105
NXPH4
KLB
LRGUK
MTMR7
PPFIBP2
ELAPOR2
UBE2I
TLE2
PGPEP1L
NEUROG1
BFSP1
CEBPD
SLA
TMEM72
OSER1
RTL8B
CDC73
LMO1
ABCB5
GTF3A
NUTM2D
CTNNA3
PAM
DDX3X
LRRC1
NPAS1
GSX2
TSPAN13
REV3L
BICRA
HOXC6
HOXC5
SNRPN
KCNN4
MED4
FLVCR2
ALKAL2
MXRA7
CHD7
OR5A2
OR5A1
LRIG1
TMEM9
FGD3
GADD45GIP1
HOXB1
CAMK2N1
GPR61
STXBP5L
FAM118A
PPP1R1A
POU2F2
RFX3
ERCC1
OSBPL11
PHC2
DLG2
ZNF746
NEO1
PRRC2C
ALPL
RABGAP1L
TPST2
CLEC18C
NINL
TNNI3K
CDH16
LECT2
CRABP2
FGFR2
PAH
ASCL1
DMBX1
RASL12
KBTBD13
SCARF1
RILP
PCBD2
NCOA7
MNX1
FOXP1
PPP1R16B
LOC102724265
PADI2
SHF
SSBP2
MUSTN1
ITIH4
TMEM237
TRPM3
ST18
RUNX1T1
DMD
TTR
BTBD1
EBF3
GJA8
CCDC33
CPA1
ZFX
SYCP2
PPP1R3D
FAM217B
PLCH1
C1orf226
TRIM65
MRPL38
CRYAA2
CRYAA
HDAC9
FOXN4
ST8SIA3
TBX3
RGL1
CYP26A1
USP17L11
PRR16
USP17L19
HOXC4
FBXL18
ACTB
AMBN
PDX1
ZNF585B
ZNF383
FXYD2
ID3
DSCAML1
USP17L18
USP17L17
CDPF1
PHOX2B
GNG12
METTL24
ZNF367
NPY2R
PREX2
TNFRSF19
ELMOD2
TANC1
RPN1
STARD13
IKBKB
USP17L13
USP17L15
FMN2
GTF3C4
DDX31
CLDN2
SYBU
LEKR1
MEF2C
RAN
NANOG
FSTL1
ALKBH5
DONSON
SLC2A9
MEIS3
LHX2
CNN3
SPCS1
GLT8D1
SLC39A14
POTEJ
NPAS3
SMUG1
TMPPE
GLB1
USP17L10
GUCY1A1
RCOR3
HNF1A
HPD
CS
CAMTA1
MAB21L2
CHD8
LMO2
EFNB2
FAM181A
KLHDC7A
ADO
GPR84
AGER
PBX2
GPSM3
HNRNPA2B1
CBX3
BNC2
LCA5
ZFAND1
CHMP4C
CLRN1
TNFSF18
IPO11
DIMT1
FOXL3
NXT1
NAF1
ARHGAP10
LDLRAP1
RCOR1
B3GALT5
MSI1
ZNF853
QPRT
AMD1
ELMO1
DLL4
CHODL
PDPN
EPB41L2
HK3
APOLD1
NAV3
LIX1
MS4A4A
AQP6
CASC3
KCNIP4
DPYD
FIGNL2
PLEKHG4B
GGCT
PCDH18
LIN28A
REC8
VANGL2
TFAP2B
VSTM2L
LGALS12
RORB
NEK3
LRRC10B
KRTAP12-1
RXRG
SPTSSB
KMT2A
TCF12
SYNPR
IGFN1
NRCAM
PRTG
LDHB
FNIP2
CLEC18B
SOCS3
CATSPERG
FAM162A
CCDC58
CPLX1
TSPAN11
AXDND1
VOPP1
EVX1
CDRT15L2
KIF26A
CNTN1
MMRN1
NEUROD4
DIPK1B
ABAT
CFAP221
SH2B1
HRG
ARHGEF28
MBNL3
OAZ2
PTCHD4
PSMB5
ADD3
SPARCL1
PHTF1
DDO
LMO3
FILIP1L
GALNTL6
SRSF11
LRRC40
KLHL7
FGF10
HOXA5
DACT2
TRDMT1
PPP2R5A
GSTP1
DSE
CDH4
FGFR4
TSPYL1
CREB5
CD79A
ARHGEF1
MYLK3
RIPOR2
MAFA
RASSF10
PRSS47
KAT6B
PAX8
DUSP2
ASTL
GALR1
GCSAM
EMCN
DCDC2
MAD2L2
DRAXIN
SPOCK2
CDH18
LOC102723360
WBP1L
MECOM
OMD
GAS2L3
BAHCC1
DZIP3
CIP2A
IFFO2
SOX6
EAPP
ADM
SOAT2
IGFBP6
SH3BP4
DUSP4
PEX2
ANKRD6
ID4
RBP1
SIRT4
HNRNPD
FRS2
FAM107A
FABP9
JUN
SMIM28
CACNA1H
TP53INP1
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
DUSP29
SP2
ARID3B
SPATC1L
NFE2
IER3
FLOT1
H2BU1
H2AW
DUSP6
NDUFS7
ZSWIM1
SPATA25
NEURL2
ZNF775
ZP4
DPP9
TBL2
CTSA
USP29
GPR108
BHLHE40
LEFTY2
BBS9
PCGF1
TRIP10
LBX2
VSIR
WDR74
STX5
MAMDC2
TTI2
ARHGDIA
INSM1
ASB2
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
TAF12
LPIN1
DNM2
MLEC
SP1
SLC39A7
RXRB
HSD17B8
TBX2
ANKLE2
COL23A1
NHS
S100A10
FBXO31
NPAS4
MINDY2
SP5
MAP1LC3B
HUS1
SYTL3
PPP6R3
ANKRD28
H2BC17
H2AC17
RPS10-NUDT3
RPS10
COL11A2
TMEM70
ELOC
PDE4D
EXOC2
XKR7
FRA10AC1
RPL22
RNF207
RAB5B
PMEL
CDK2
HPCAL1
E4F1
SMAD3
CCNDBP1
ZFHX3
MRPL34
DDA1
ABHD8
PKDCC
BAZ2A
CLGN
STX18
CHN2
KDM6B
FRYL
STAP2
CPVL
KANSL3
FER1L5
OTUD7B
ARSG
TMEM242
DLX4
DYNLT1
DOLPP1
GPC6
KDM2B
ARRDC4
ASB6
RPS24
POLR3A
PGK1
ATP5F1B
ABLIM3
SEPTIN9
ATF6
ETAA1
POR
CERK
RBPJ
CADM3
EXOSC4
SH3BP2
JUP
NELFA
MFSD10
UPF3A
MRPL20
PPCDC
RARG
PC
NINJ2
RHBDD1
BCL3
KATNB1
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TMEM101
TRIB1
CCDC174
RING1
ABHD2
CCNL2
ABCC10
SREBF1
ADAP1
ZNF687
SMARCD2
BMF
RFX1
CLCN3
MTMR4
LFNG
SMG6
KAZALD1
GATA4
ATP1A1
MALRD1
GPCPD1
NBPF1
ZFP36
PLEKHG2
CNOT2
CBX5
MIDEAS
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
NRL
C9orf92
PCGF2
RNF34
TOP2A
PRKAG2
CALM2
RASSF5
SPG7
PSPN
ALKBH7
TLX2
NOL4L
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
PPP1R18
NRM
MRPS31
FURIN
NUBP1
THOP1
SGTA
SACM1L
KAT7
TRAF7
ANGPTL4
DLC1
RHOQ
ATP6V1E2
PCNA
ITGAV
ECEL1
STAT1
NFKBIA
RPLP1
ARHGAP30
IQSEC3
RAB26
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
HNMT
DNAH1
DCAF11
ZFAND2A
TRIM26
SSBP4
ZNF740
CSAD
PXYLP1
PRDM10
CDS2
ARRDC2
OSBP
NLK
ATP1B1
GPR20
EIF2AK3
SKI
ZNF77
IL17RD
STIP1
RPS7
CSF3R
HMGCS1
PSMD6
SOD2
AHDC1
SERPINE1
ART1
TCP10L
TRIM7