ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX4671297 | NAMEC8
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◣ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

MTRNR2L1
ID1
CCDC200
LAMA5
DUX4
EAPP
ZGPAT
ARFRP1
TGM2
IER3
FLOT1
WDR74
STX5
SOAT2
IGFBP6
BHLHE40
MTRNR2L2
MSH3
DHFR
BIN1
ABCC10
KNL1
ABLIM3
ANGPTL4
SERPINE1
VSIR
SNAPC1
TMEM107
SHF
MYEOV
ERCC1
TTI2
POLDIP3
HSPA6
LTBP3
MIDEAS
ITGB2
ITGA5
PDE12
PLEKHA7
NOL4L
ADAMTS9
TRIB1
FOXS1
GSTA4
HIF3A
TRIM7
BORCS6
PECAM1
TAF12
ARID3B
PRKAG2
POLG
IL32
FRG2C
GPR39
POLR3E
SIT1
CCDC107
ARHGEF39
ZSWIM1
SPATA25
NEURL2
CTSA
NEMF
KIF2C
COL1A1
PARP16
TNS4
USP2
PRMT5
PIKFYVE
DPP9
STX16
TTPAL
VGLL4
UPP1
SCNN1A
LTBR
SMAD3
ACYP1
ZC2HC1C
GDF5
PPP6R3
TSPAN4
POLR2L
DUSP1
TCTEX1D4
PLK3
BTBD19
CSNK1D
CDKN1A
B4GALT1
PARD6B
MEAK7
RGS3
SLC35E2B
HES7
ALOXE3
MPZL1
C8orf37
NDUFS7
MAMDC2
RXRA
RAB11A
TRIOBP
PDXK
PLXDC1
H4C8
PSMA3
RPS29
BCL2L1
ZNF184
SH2B1
LTA4H
CLCF1
ZNF367
PRR7
FHL2
SACM1L
TMCO6
LUC7L2
FMC1-LUC7L2
FMC1
CD14
SIRT4
CCND3
KLRC3
TAF8
EREG
STX1A
NFKBIA
MDM4
SLC37A2
JUNB
MNT
CCDC88B
WNT9A
MTRNR2L8
PHC2
SH3BP4
HMGN4
BRMS1
B4GAT1
CLDND1
IL6ST
SLCO4A1
SYT8
ENOSF1
PTGIS
ART1
ACSL1
VASN
CCL20
H4C3
H1-6
ALLC
C11orf86
IL34
TINAGL1
GPRC5A
SLC34A3
ANK1
RNF224
RNF208
CYSRT1
BCAR1
OR6S1
WNT7B
FRG2
H4C12
H4C11
H2BC15
H2AC15
DDIT4
ATP13A2
LAPTM5
PKM
MXD4
TRIM55
RNASE4
ANG
MUC5AC
PPL
SMIM3
NIBAN2
PSCA
MFSD10
BCL3
NUF2
APOL6
H2BC17
H2AC17
WSB2
KLF9
OR2B2
CARD10
UBC
PARP2
CCNB1IP1
YJU2
LY6K
MICALCL
LCA5
SCAND1
AMOTL2
DYNLRB1
NPR1
ILF2
EPM2A
MRPL33
MED16
ALAS1
PTPN6
C12orf57
CRTC1
FBXO46
ASB2
OR1F1
FOXP1
KANK2
LIPM
RDH5
CD63
N4BP2
RALGDS
RARA
SKI
IGF2BP3
PHLDB2
CTSD
ENAH
ZBED9
SLC41A3
ITGB5
SYS1
ABHD2
PCGF2
NCOA7
PC
NDST1
CCN5
DLC1
NRP1
ELOVL6
TCF7
BCL7A
NAA38
CHD3
KRT31
TAF9
RAD17
AK6
AJUBA
SNX8
SEPTIN9
STX10
IER2
VAMP2
PER1
FCGR3A
PMEPA1
HMGA1
ITGA3
SMIM29
TTC39C
SH3GL1
METRNL
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
H2BC14
H2AC14
MAP1LC3B2
FOSL1
NADK
ADSS1
NEDD4L
CSRP1
METTL26
WFIKKN1
EPB41L1
TMEM40
TAGLN2
ALOX5AP
GIP
KLHL30
C3
GFOD1
MYC
DTNB
RHOB
S100A2
TNNI2
TRAM2
TNK2
DUSP10
GNAL
CHMP1B
IL20RB
ARID3A
LYPLA2
GALE
CETP
SQSTM1
OSBPL3
ANXA11
NID2
C1QTNF1
POLR2E
GPX4
SPAAR
HRCT1
ARHGAP22
RARG
CDC42EP1
PADI2
RGS2
JPH2
NQO1
KCNMA1
TANK
KYAT1
NFIC
SLC22A18
HOGA1
ANKRD2
ARMC12
FKBP5
OMP
ZFAND3
VPS26C
GOLGA1
C19orf33
ARIH2
EIF4A3
FITM2
TNFRSF6B
SREBF1
SREBF2
ANPEP
MRPS10
H3C6
H2BC8
H2AC8
OR2T1
ZG16B
BNC1
RIN1
TES
ZC3H12A
TMEM184A
NIPAL4
MAP3K14
NPIPA8
TMEM259
CNN2
PLAU
HM13
CDK5RAP1
RRN3
UQCRHL
IRF2BP2
KANK4
TENT5B
FBXO31
MAP1LC3B
MLLT1
CLDN4
ARL6IP1
FLYWCH1
AGFG2
TOR2A
RNF223
PRSS38
ANXA5
MT2A
PEAR1
SLC45A4
LTBP1
EXOSC6
H3C4
H4C4
H2BC6
UBE2H
FASN
NT5DC3
SBNO2
CDK13
CPA4
PNPLA3
ZNF335
RABL2B
RABL2A
PSMD1
RWDD1
MAPKAPK5
TAOK3
SUDS3
NME6
CACTIN
NUP85
POLR3F
DZANK1
FAM187A
EFTUD2
CCDC103
NVL
IPO13
DYNC1LI2
VDAC2
HSPA9
GOSR2
VTI1B
PSMG2
CEP76
NUP205
MRPS7
MIF4GD
GGA3
HADHB
HADHA
RPL21
S1PR4
REXO1
NCLN
TBCK
AIMP1
EXOSC5
BCKDHA
C19orf48
NNAT
BLCAP
DCTN1
TSNAX
STAM
ATP5MG
SLC35B1
TSN
STAM2
SEC61B
ALG2
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
PNO1
PES1
PAK1IP1
C6orf52
RBBP5
UPF2
SKP1
ZNF576
IRGQ
NDUFA4
LOC102724770
DGCR6
ZNF503
COX7A2L
CAPRIN1
SART3
ISCU
ACTR10
RBKS
BABAM2
ZRANB2
DPH6
TTC8
GOLGA5
SUPV3L1
RPL35A
IQCG
VARS1
PI4KB
LMLN
TMED1
RPS23
ATP6AP1L
RPS12
SMC2
ANAPC7
MRPS5
FAM104A
C17orf80
SELENOF
HS2ST1
RABGGTB
PCBP1
USP1
PDAP1
BUD31
HSPA1B
SFI1
EIF4ENIF1
UFM1
ADK
DNAJB7
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
C6orf47
APOM
BAG6
PROSER1
NHLRC3
PIP4P1
COMMD1
OSGEP
APEX1
CCT4
SF3B3
COG4
PAF1
TM9SF1
IPO4
NEUROG2
TSSK4
NFKBIL1
DDX39B
ATP6V1G2
PPP1R1B
PDE6B
RARB
LRR1
NEUROG3
PTGES2
HES1
HOXA3
ZNF608
PIN4
OR6B2
NDUFA10
SUCLG1
OAZ3
MRPL9
UBE2I
ARF1
ICMT
HES3
HOXA4
WNT1
HOXA1
DUSP29
ARHGAP11A-SCG5
ARHGAP11A
CDX2
STK36
RNF25
SP2
MBTPS1
MRTO4
EMC1
SKIL
DHRS3
GLRA1
LARP7
SPATC1L
BICRA
CYP26A1
VEZT
FGD6
FZD8
UNKL
ID2
ARHGAP10
SEC11C
RPL7
RDH10
EIF2S3
GADD45GIP1
CDC73
NFE2
SYBU
NR2F1
C16orf91
PLAGL1
PMAIP1
G6PC2
CBFA2T2
CCDC33
HOXA2
PALM2AKAP2
H2BU1
H2AW
DUSP6
RPN1
GORAB
NEUROD1
GTF3C4
DDX31
ZNF775
MUC20
ZP4
SERINC5
KCNN4
NEUROG1
ATOH1
RAB11FIP1
KAT6B
CNPY2
IGFBP2
LZTS1
TLE4
TBL2
ZFHX4
BNIP3
USP29
GPR108
TPM1
TLE3
TRIM65
ZNF585B
ZNF383
LEFTY2
BBS9
PCGF1
TRIP10
LBX1
AQP6
CDH18
MRPL38
SPCS1
GLT8D1
PDHX
APIP
ERRFI1
DDAH1
LBX2
PHOX2B
HOXB1
METTL24
LIN28A
ST18
RUNX1T1
HOXA5
TBX3
ARHGDIA
TLE2
INSM1
ETS1
ZNF746
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
FAM222A
PCBD2
LPIN1
DNM2
MLEC
DAPL1
ARHGAP24
ARID3C
FGF19
TPRA1
PAH
MCM2
CITED2
SP1
SLC39A7
RXRB
HSD17B8
TBX2
ANKLE2
COL23A1
HOXB3
ALKBH5
NHS
S100A10
URM1
NPAS4
DLL4
RHBDD3
EWSR1
ADNP2
HOXC4
MINDY2
HPD
SP5
PRUNE2
TNFRSF19
HUS1
SYTL3
CS
CRABP2
FILIP1L
ANKRD28
DCTN3
RPS10-NUDT3
RPS10
COL11A2
TMEM70
ELOC
UNCX
SYNPO
CCN1
PDE4D
EXOC2
XKR7
FRA10AC1
PDHB
CALCOCO1
RPL22
RNF207
RAB5B
PMEL
CDK2
FXYD2
HPCAL1
AXDND1
E4F1
CNTN1
KIF21B
CCNDBP1
ZFHX3
ANK2
MRPL34
DDA1
ABHD8
PKDCC
NFIA
BAZ2A
CLGN
STX18
ARHGEF28
CHN2
HOXC6
FABP7
KDM6B
CAMTA1
FRYL
TLE1
STAP2
ITGB6
ID3
CPVL
KANSL3
FER1L5
OTUD7B
TMEM120B
ARSG
TMEM242
DLX4
BAIAP2
VIP
PPFIBP2
DYNLT1
DONSON
DOLPP1
GPC6
KDM2B
ARRDC4
ASB6
RPS24
POLR3A
PDZRN3
PGK1
ATP5F1B
ATF6
CERCAM
MAB21L2
ETAA1
FOXP2
POR
CERK
POP5
RBPJ
CADM3
MSX1
EXOSC4
SH3BP2
JUP
NELFA
UPF3A
PRRX1
SMPDL3A
MRPL20
PPCDC
NINJ2
RHBDD1
KATNB1
QPRT
PANK2
PTK2B
KCNAB2
SHC1
TMEM101
CCDC174
RING1
MYLK4
MEIS2
SRSF11
CCNL2
MBNL3
ADAP1
ZNF687
SMARCD2
BMF
RFX1
CLCN3
SMIM28
MTMR4
LFNG
TMEM9
SMG6
KAZALD1
GATA4
ATP1A1
MALRD1
DACT2
GPCPD1
NBPF1
ZFP36
PLEKHG2
CNOT2
CBX5
MRPL3
USP17L21
USP17L20
USP17L12
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
NRL
C9orf92
RNF34
TOP2A
CALM2
RASSF5
SLC2A9
SPG7
PSPN
ALKBH7
TLX2
SOCS3
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
PPP1R18
NRM
MRPS31
HNRNPA2B1
CBX3
LRRC40
FURIN
NUBP1
THOP1
SGTA
RABGAP1L
KAT7
DLG2
TRAF7
USP17L22
RHOQ
ATP6V1E2
PCNA
ITGAV
RPL34
ECEL1
STAT1
CRYAA2
CRYAA
BAHCC1
NOTCH2
RPLP1
ASXL3
ARHGAP30
IQSEC3
RAB26
NR2F6
RNF103-CHMP3
RMND5A
HNMT
DNAH1
DCAF11
ZFAND2A
PDE4DIP
TRIM26
SSBP4
ZNF740
CSAD
PXYLP1
PRDM10
NAV3
CDS2
ARRDC2
ASCL1
GTF3A
OSBP
NLK
GRIK2
ATP1B1
GPR20
EIF2AK3
ZNF77
IL17RD
STIP1
RPS7
CSF3R
HMGCS1
PSMD6
SOD2
AHDC1
LRATD2
STARD13
CLDN11
DSCAML1
TCP10L
HAND1
SLC25A25
SEPTIN4
ZC3H3
RAB37
ECE1
MDM2
GADD45G
RAB11B
CAPG
ME3
RBBP7
AGO1
CAPNS2
TRIB3
GADD45A
G3BP1
ZNF564
MYBPC3
LPCAT3
KMT5A
IKBKB
NCOA2
HOXB4
EVI5L
GOT1
SPRED2
KDM8
RTN4
PIPOX
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
MACROH2A1
CCL26
EMP3
FTL
SOCS2
ELL
SH2D6
CBX4
RGS12
HNRNPD
LMO4
RBM15
TNFAIP2
METRN
COL21A1
CTSW
ADM
FAM107B
SMIM20
PDP2
TPCN1
SLC7A5
CRLS1
ZNF827
SYNJ2
GRSF1
SCGB1A1
METTL3
LIG3
LMOD1
EVA1A
CORO1A
TCF7L2
HTR1F
MYRIP