ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX17639400 | NB-4
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◣ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

MTRNR2L8
MTRNR2L1
DUX4
TBL2
PDE6B
ZGPAT
ARFRP1
NFE2
MTRNR2L2
MSH3
DHFR
IER3
FLOT1
RBKS
BABAM2
COL23A1
PRAM1
ART1
CCDC88B
SKI
LAPTM5
SKIL
B4GALNT3
INAVA
SMIM20
PHRF1
KAT6B
RASGRP2
LAT2
ITGA5
PCNA
CDS2
STX1A
DHRS3
ICAM1
ZNF746
UPF3A
C16orf54
NR2C2
FRG2C
MEF2D
KIAA0513
RNPEPL1
DUSP28
ANKMY1
HIP1
ZNF740
CSAD
KANSL3
FER1L5
NAA10
ARHGAP4
ARHGEF18
MRPS31
BTNL9
ARID3B
CCNDBP1
FTL
BAX
SERPINB1
CXXC5
NDUFA4
ERCC1
ZNF775
ADD1
LIMK1
DRD4
PPCDC
RNF166
CTU2
RARG
PITPNM2
SMG6
NCOA4
FRG2
KEAP1
AHNAK
AGTRAP
ZNF414
NUDT4B
SPDYE9
SPDYE8
SPDYE15
SPDYE13
SPDYE11
ZFYVE28
CFAP99
NOC4L
DDX51
MYEOV
MTG1
SERTAD2
SCAP
CEBPE
LMLN2
ANPEP
NFILZ
GH1
CSHL1
SRCAP
LOC730183
ELOF1
ACP5
ID1
IRF1
ZGLP1
HUS1
NR2C1
ADGRA1
LPCAT3
MYRF
USP37
CNOT9
CTSD
GDPGP1
CIB1
TXNDC11
ACSL3
ADGRE2
DNAJC16
CASP9
MDM2
DZIP3
CIP2A
ASB2
STX10
IER2
PDCD6IP
MAP3K8
PARP2
CCNB1IP1
PICALM
DENND6A
FCGR1A
MBD6
DDIT3
DNAJB2
AEBP1
EMP3
CCDC114
SREBF1
COX5A
MYO1G
MRPL4
MUC3A
CTCF
ANKRD18B
MNT
SIGIRR
ZNF217
SH3BP1
PLIN2
SHISAL2A
TRPM2
MOB3A
IZUMO4
MTRF1L
YARS1
S100PBP
MPC1
TMEM182
MFSD9
RAPGEF1
MYO1F
RASSF2
RGS19
OPRL1
LKAAEAR1
PDE4B
SOD2
WTAP
CXCR4
SEC14L1
SLC2A5
SLC35C1
ARL4A
CCL2
PPP1R27
MCRIP1
PPP3CB
MED9
GTPBP6
TRIM8
MACROH2A1
TMEM205
RAB3D
CCDC159
SBF1
MAP1LC3B2
KAZALD1
NFKBID
TYROBP
HCST
RPS6KA1
ING1
CARS2
SEPTIN2
HDLBP
CD38
IPPK
STX18
ADAM17
CHST13
DRC7
KRI1
CDKN2D
KMT5A
PKM
BHLHE40
ACACA
NKX1-1
CCND3
MFN2
ZNRD2
FAM89B
EHBP1L1
NAMPT
SH2B3
MAP2K3
NCOA2
EPM2A
GPR35
LFNG
SPAAR
HRCT1
GFOD1
F11R
TOX2
NIBAN3
CCDC200
RARB
NOL4L
HRH1
RAD23A
CALR
FARSA
SMUG1
SYTL1
MTHFR
CLCN6
FAR2
BAZ1B
CYP2E1
THAP11
CENPT
NUTF2
STN1
RAP1GAP2
GSG1
CNOT2
SLC25A19
CYB5R4
RIPPLY2
GPATCH8
CBFA2T3
IDH1
HPCAL1
PRELID3B
SPATA1
GNG5
GALNT9
SH2B1
NINJ2
RNF149
PDSS2
SOAT2
IGFBP6
CYTH4
MAPK8
CDKN2AIP
ARID2
LYL1
MYADM
BOLA3
PRSS22
ICAM3
RAVER1
RBM7
C11orf71
ZC3H4
SH3BP2
RNF103-CHMP3
RMND5A
GYPC
PIK3AP1
ZSWIM1
SPATA25
NEURL2
CTSA
ANXA11
JUND
IQCN
MAMDC2
DNAJB1
WT1
OAZ1
FLNA
MACC1
NFATC3
RNF168
NRL
DCAF11
ETFB
BIN2
MYO18A
NKG7
CLDND2
UBE2R2
COL4A2-AS2
KRAS
ADPRHL1
ZNF595
SLC11A2
TAGLN2
TCTEX1D4
PLK3
BTBD19
RNASEH1
GPR108
TRIP10
PA2G4
PHF19
CD82
AP5B1
HES1
MIDN
CCDC102A
ADGRG5
TBL1XR1
MUC20
UPP1
CTBP2
PGAM5
SDE2
VPS37C
SMARCD2
CYB561
ADIPOR2
FMNL1
AP1B1
POLG2
DDX5
CALHM3
SSBP4
SUSD3
SLC4A2
CDK5
ASIC3
ICAM5
ICAM4
ISYNA1
MINDY2
SPIN1
AZIN1
BAG2
LMBRD1
PPP1R14B
VEGFB
LOC114841035
FKBP2
TCAP
PNMT
HDAC7
MID1IP1
ZCCHC24
RARA
BCL3
C5AR1
SLC66A2
PGLS
NOTCH2NLA
FIGNL1
PDCD4
NPBWR2
PTEN
KLLN
CENPH
BCAP29
SLC20A1
LIPA
NPIPA3
NPIPA2
RELT
SPDYE7P
POM121
MRPL2
KLC4
CUL7
AARS2
CYP4V2
ZC3H6
ZSWIM9
LIG1
FAM200B
GSPT1
IQUB
QPRT
IRF5
ROM1
EML3
B3GAT3
ARSG
PDP2
SPHK2
NRROS
IGF2BP3
RPL18
FAM83E
RHBDF2
BCAT1
ZNF114
STING1
LMBR1
ACTL9
CNR2
AP2S1
PXYLP1
VSIR
PPP1R18
NRM
DHX16
TRAK2
STRADB
ZNF335
RABL2B
RABL2A
PSMD1
RWDD1
MAPKAPK5
TAOK3
SUDS3
NME6
CACTIN
NUP85
POLR3F
DZANK1
FAM187A
EFTUD2
CCDC103
NVL
IPO13
DYNC1LI2
POLR2E
GPX4
VDAC2
HSPA9
GOSR2
VTI1B
PSMG2
CEP76
NUP205
MRPS7
MIF4GD
GGA3
HADHB
HADHA
RPL21
S1PR4
REXO1
NCLN
TBCK
AIMP1
EXOSC5
BCKDHA
C19orf48
NNAT
BLCAP
DCTN1
TSNAX
STAM
ATP5MG
SLC35B1
TSN
STAM2
SEC61B
ALG2
FARSB
PSMD12
LYRM4
FARS2
SRD5A1
PNO1
PES1
PAK1IP1
C6orf52
RBBP5
UPF2
SKP1
ZNF576
IRGQ
LOC102724770
DGCR6
ZNF503
COX7A2L
CAPRIN1
SART3
ISCU
ACTR10
ZRANB2
DPH6
TTC8
GOLGA5
SUPV3L1
RPL35A
IQCG
VARS1
PI4KB
LMLN
TMED1
RPS23
ATP6AP1L
RPS12
SMC2
ANAPC7
MRPS5
FAM104A
C17orf80
SELENOF
HS2ST1
RABGGTB
PCBP1
USP1
PDAP1
BUD31
HSPA1B
SFI1
EIF4ENIF1
UFM1
ADK
DNAJB7
XPNPEP3
ST13
RPS27A
CLHC1
AP3M1
ICE1
C6orf47
APOM
BAG6
PROSER1
NHLRC3
PIP4P1
COMMD1
OSGEP
APEX1
CCT4
SF3B3
COG4
PAF1
TM9SF1
IPO4
RPS29
NEUROG2
TSSK4
NFKBIL1
DDX39B
ATP6V1G2
PPP1R1B
LRR1
NEUROG3
PTGES2
HOXA3
ZNF608
PIN4
OR6B2
NDUFA10
SUCLG1
OAZ3
MRPL9
UBE2I
ARF1
ICMT
HES3
HOXA4
PDE12
WNT1
HOXA1
DUSP29
ARHGAP11A-SCG5
ARHGAP11A
CDX2
TAF9
RAD17
AK6
STK36
RNF25
SP2
EAPP
MBTPS1
MRTO4
EMC1
GLRA1
LARP7
SPATC1L
BICRA
CYP26A1
VEZT
FGD6
SNAPC1
FZD8
UNKL
ID2
ARHGAP10
SEC11C
RPL7
RDH10
EIF2S3
GADD45GIP1
CDC73
SYBU
NR2F1
C16orf91
PLAGL1
PMAIP1
G6PC2
CBFA2T2
CCDC33
HOXA2
PALM2AKAP2
H2BU1
H2AW
TMEM107
DUSP6
RPN1
GORAB
NDUFS7
NEUROD1
GTF3C4
DDX31
ZP4
SERINC5
KCNN4
NEUROG1
ATOH1
RAB11FIP1
CNPY2
IGFBP2
DPP9
LZTS1
TLE4
ZFHX4
BNIP3
USP29
TPM1
TLE3
TRIM65
ZNF585B
ZNF383
LEFTY2
BBS9
PCGF1
LBX1
AQP6
CDH18
MRPL38
SPCS1
GLT8D1
PDHX
APIP
FOXP1
ERRFI1
DDAH1
LBX2
WDR74
STX5
PHOX2B
HOXB1
TTI2
METTL24
LIN28A
ST18
RUNX1T1
HOXA5
TBX3
ARHGDIA
PHC2
TLE2
INSM1
ETS1
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
FAM222A
PCBD2
TAF12
LPIN1
DNM2
MLEC
DAPL1
ARHGAP24
ARID3C
FGF19
TPRA1
PAH
MCM2
CITED2
SP1
SLC39A7
RXRB
HSD17B8
TBX2
ANKLE2
HOXB3
ALKBH5
NHS
S100A10
URM1
FBXO31
NPAS4
DLL4
RHBDD3
EWSR1
ADNP2
NCOA7
HOXC4
HPD
SP5
PRUNE2
TNFRSF19
MAP1LC3B
SYTL3
CS
CRABP2
PPP6R3
FILIP1L
ANKRD28
DCTN3
H2BC17
H2AC17
RPS10-NUDT3
RPS10
COL11A2
TMEM70
ELOC
UNCX
SYNPO
CCN1
PDE4D
EXOC2
XKR7
FRA10AC1
PDHB
CALCOCO1
RPL22
RNF207
RAB5B
PMEL
CDK2
FXYD2
AXDND1
E4F1
SMAD3
CNTN1
KIF21B
ZFHX3
ANK2
MRPL34
DDA1
ABHD8
PKDCC
NFIA
BAZ2A
CLGN
ARHGEF28
CHN2
HOXC6
FABP7
KDM6B
CAMTA1
FRYL
TLE1
STAP2
ITGB6
ID3
CPVL
OTUD7B
TMEM120B
TMEM242
DLX4
BAIAP2
VIP
PPFIBP2
DYNLT1
DONSON
DOLPP1
GPC6
KDM2B
ARRDC4
ASB6
RPS24
POLR3A
PDZRN3
PGK1
ATP5F1B
ABLIM3
SEPTIN9
ATF6
CERCAM
MAB21L2
ETAA1
FOXP2
POR
CERK
POP5
RBPJ
CADM3
MSX1
SIRT4
EXOSC4
JUP
NELFA
MFSD10
PRRX1
SMPDL3A
ARHGAP22
MRPL20
PC
RHBDD1
KATNB1
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TMEM101
TRIB1
CCDC174
RING1
MYLK4
MEIS2
SRSF11
ABHD2
CCNL2
ABCC10
IRF2BP2
MBNL3
ADAP1
ZNF687
BMF
RFX1
CLCN3
SMIM28
MTMR4
TMEM9
GATA4
ATP1A1
MALRD1
DACT2
GPCPD1
NBPF1
ZFP36
PLEKHG2
CBX5
MIDEAS
MRPL3
USP17L21
USP17L20
USP17L12
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
C9orf92
ZNF367
PCGF2
RNF34
TOP2A
PRKAG2
CALM2
RASSF5
SLC2A9
SPG7
PSPN
ALKBH7
TLX2
SOCS3
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
HNRNPA2B1
CBX3
LRRC40
FURIN
NUBP1
THOP1
SGTA
SACM1L
RABGAP1L
KAT7
DLG2
TRAF7
ANGPTL4
DLC1
USP17L22
RHOQ
ATP6V1E2
ITGAV
RPL34
ECEL1
STAT1
CRYAA2
CRYAA
BAHCC1
NFKBIA
NOTCH2
RPLP1
ASXL3
ARHGAP30
IQSEC3
RAB26
POLDIP3
NR2F6
HNMT
DNAH1
ZFAND2A
PDE4DIP
TRIM26
PRDM10
NAV3
ARRDC2
ASCL1
GTF3A
OSBP
NLK
GRIK2
ATP1B1
GPR20
SHF
EIF2AK3
ZNF77
IL17RD
STIP1
RPS7
CSF3R
HMGCS1
PSMD6
AHDC1
SERPINE1
LRATD2
STARD13
CLDN11
DSCAML1
TCP10L
TRIM7
HAND1
RGS3
SLC25A25
SEPTIN4
ZC3H3
RAB37
ECE1
GADD45G
SLC45A4
RAB11B
CAPG
ME3
KNL1
BRMS1
RBBP7
AGO1
ACYP1
CAPNS2
TRIB3
GADD45A
G3BP1
ZNF564
MYBPC3
IKBKB
BORCS6
HOXB4
EVI5L
GOT1
SPRED2
KDM8
RTN4
PIPOX
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
CCL26
SOCS2
ELL
SH2D6
CBX4