ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584311 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◣ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

DUX4
ZNF335
RABL2B
RABL2A
POLR3F
DZANK1
PSMD1
IPO13
RPL21
RWDD1
NUP85
DYNC1LI2
MAPKAPK5
NME6
VTI1B
TAOK3
SUDS3
FAM187A
EFTUD2
CCDC103
CACTIN
VDAC2
HSPA9
NVL
PSMG2
CEP76
SRD5A1
NUP205
REXO1
C19orf48
TBCK
AIMP1
MRPS7
MIF4GD
GGA3
LYRM4
FARS2
HADHB
HADHA
STAM
TSNAX
POLR2E
GPX4
ATP5MG
SLC35B1
GOSR2
S1PR4
NCLN
EXOSC5
BCKDHA
UPF2
SART3
ISCU
DCTN1
LOC102724770
DGCR6
FRG2C
FARSB
NNAT
BLCAP
STAM2
PES1
ZNF503
HOXA3
HOXA4
PPP1R1B
NDUFA4
GOLGA5
ZNF576
IRGQ
PNO1
SEC61B
ALG2
DPH6
SKP1
TSN
PSMD12
RPS23
ATP6AP1L
ACTR10
USP1
SMC2
ZRANB2
TTC8
TMED1
SFI1
EIF4ENIF1
PAK1IP1
C6orf52
RBBP5
UFM1
ARF1
RABGGTB
COX7A2L
SUPV3L1
CAPRIN1
NFKBIL1
DDX39B
ATP6V1G2
PI4KB
PIP4P1
OSGEP
APEX1
RPL35A
IQCG
LMLN
DNAJB7
XPNPEP3
ST13
ANAPC7
C6orf47
APOM
BAG6
ICE1
RPS12
FAM104A
C17orf80
SF3B3
COG4
PCBP1
PDAP1
BUD31
MRPS5
VARS1
RBKS
BABAM2
POU2F2
ZFHX4
FRG2
NEUROG1
HES1
WNT1
SELENOF
HS2ST1
PROSER1
NHLRC3
GRIK2
ADK
AP3M1
RPS27A
CLHC1
ABCG2
UBE2I
RND3
SEC11C
NEUROG2
ICMT
HES3
FGF19
UNKL
C16orf91
BICRA
LRATD2
PAF1
RPS29
LRR1
G6PC2
CALCOCO1
OR6B2
NDUFA10
FZD8
ARHGAP11A-SCG5
ARHGAP11A
RPL7
RDH10
MSX1
TM9SF1
IPO4
TSSK4
TAF9
RAD17
AK6
NFIA
PDE6B
MRTO4
EMC1
DMRT3
SERINC5
STK36
RNF25
HSPA1B
COMMD1
CCT4
NEUROD1
MUC20
RAB11FIP1
PTGES2
TMEM120B
HOXA5
CDPF1
GNG12
SYNGR4
FXYD2
DSCAML1
RHBDD3
EWSR1
FABP7
SMPDL3A
PIN4
ANK2
TLE1
BRINP1
PLAGL1
ITGB6
KCNN4
PRDM13
HOXB3
HOXB4
FGD3
SUCLG1
LBX1
SOGA3
KMT2A
SYNPO
NCOR2
CNPY2
TMEM70
ELOC
LAMA4
PAX3
ZGPAT
ARFRP1
HOXC6
HOXC5
PARP11
EIF2S3
MEIS2
SLA
CLDN11
RTL8B
GTF3C4
DDX31
SPTBN1
HSPA6
ZNF608
PDE1A
ARHGAP24
SPRR1A
TMEM72
PDE12
ETS1
ANKLE2
SEMA4D
PIPOX
SEC22B
PDHB
USP17L21
USP17L20
USP17L12
USP17L22
PRM3
PRM2
PRM1
TNP2
CABP7
OAZ3
MRPL9
CYP26A1
HMX2
BUB3
SH3BP5
C5orf63
BNIP3
ALKBH5
FBXL18
ACTB
PALM2AKAP2
PDHX
APIP
SMURF1
PCBD2
CHODL
EVX2
FRMD4A
TMEM107
LRRC10
ERRFI1
PDE1B
NR2F1
GDF10
COL17A1
RAI14
KCNK16
LIMK2
NFIB
GFRA1
TLE2
TLE4
CS
GSX2
ARID3C
DCTN3
MRPL3
BBS9
SKIL
POP5
TPO
ACSS3
RBBP7
VAV3
GADD45GIP1
C1orf105
CPA1
HOXD3
KBTBD8
DTX4
HOXA1
HOXA2
DDAH1
CCN1
SLC2A9
SMIM28
CERCAM
SNCG
MMRN2
GALNTL6
TMEM275
AGER
PBX2
GPSM3
CCDC200
VEZT
FGD6
RPL34
MYRF
FOXB2
FOXP2
USP17L13
USP17L11
MEF2C
USP17L18
USP17L10
LZTS1
GORAB
MYADM
KITLG
QPRT
RFX2
PGLYRP1
IGFL4
BECN2
FAM118A
AGMO
GLRA1
ZSWIM1
SPATA25
NEURL2
CTSA
EAPP
SPCS1
GLT8D1
PDZRN3
DLG2
PDE4DIP
LAMB4
PKHD1
ID2
RARB
MTRNR2L1
NEUROG3
MTRNR2L2
MSH3
DHFR
MTRNR2L8
ID1
DUSP29
SOAT2
IGFBP6
CDX2
SP2
MBTPS1
DHRS3
RARA
ARID3B
LARP7
SPATC1L
SNAPC1
ARHGAP10
CDC73
NFE2
SYBU
PMAIP1
IER3
FLOT1
CBFA2T2
CCDC33
H2BU1
H2AW
DUSP6
RPN1
NDUFS7
ZNF775
ZP4
SH2B1
ATOH1
KAT6B
IGFBP2
DPP9
TBL2
ERCC1
USP29
GPR108
TPM1
BHLHE40
TLE3
TRIM65
ZNF585B
ZNF383
LEFTY2
PCGF1
TRIP10
AQP6
CDH18
MRPL38
FOXP1
LBX2
VSIR
WDR74
STX5
PHOX2B
MAMDC2
HOXB1
TTI2
METTL24
LIN28A
ST18
RUNX1T1
TBX3
ARHGDIA
PHC2
INSM1
ASB2
ZNF746
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
FAM222A
TAF12
LPIN1
DNM2
MLEC
DAPL1
TPRA1
PAH
MCM2
CITED2
SP1
SLC39A7
RXRB
HSD17B8
TBX2
COL23A1
NHS
S100A10
URM1
FBXO31
NPAS4
DLL4
ADNP2
NCOA7
HOXC4
MINDY2
HPD
SP5
PRUNE2
TNFRSF19
MAP1LC3B
HUS1
SYTL3
CRABP2
PPP6R3
FILIP1L
ANKRD28
H2BC17
H2AC17
RPS10-NUDT3
RPS10
COL11A2
UNCX
PDE4D
EXOC2
XKR7
FRA10AC1
RPL22
RNF207
RAB5B
PMEL
CDK2
HPCAL1
AXDND1
E4F1
SMAD3
CNTN1
KIF21B
CCNDBP1
ZFHX3
MRPL34
DDA1
ABHD8
PKDCC
BAZ2A
CLGN
STX18
ARHGEF28
CHN2
KDM6B
CAMTA1
FRYL
STAP2
ID3
CPVL
KANSL3
FER1L5
OTUD7B
ARSG
TMEM242
DLX4
BAIAP2
VIP
PPFIBP2
DYNLT1
DONSON
DOLPP1
GPC6
KDM2B
ARRDC4
ASB6
RPS24
POLR3A
PGK1
ATP5F1B
ABLIM3
SEPTIN9
ATF6
MAB21L2
ETAA1
POR
CERK
RBPJ
CADM3
SIRT4
EXOSC4
SH3BP2
JUP
NELFA
MFSD10
UPF3A
PRRX1
ARHGAP22
MRPL20
PPCDC
RARG
PC
NINJ2
RHBDD1
BCL3
KATNB1
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TMEM101
TRIB1
CCDC174
RING1
MYLK4
SRSF11
ABHD2
CCNL2
ABCC10
IRF2BP2
SREBF1
MBNL3
ADAP1
ZNF687
SMARCD2
BMF
RFX1
CLCN3
MTMR4
LFNG
TMEM9
SMG6
KAZALD1
GATA4
ATP1A1
MALRD1
DACT2
GPCPD1
NBPF1
ZFP36
PLEKHG2
CNOT2
CBX5
MIDEAS
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
NRL
C9orf92
ZNF367
PCGF2
RNF34
TOP2A
PRKAG2
CALM2
RASSF5
SPG7
PSPN
ALKBH7
TLX2
SOCS3
NOL4L
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
PPP1R18
NRM
MRPS31
HNRNPA2B1
CBX3
LRRC40
FURIN
NUBP1
THOP1
SGTA
SACM1L
RABGAP1L
KAT7
TRAF7
ANGPTL4
DLC1
RHOQ
ATP6V1E2
PCNA
ITGAV
ECEL1
STAT1
CRYAA2
CRYAA
BAHCC1
NFKBIA
NOTCH2
RPLP1
ASXL3
ARHGAP30
IQSEC3
RAB26
POLDIP3
NR2F6
RNF103-CHMP3
RMND5A
HNMT
DNAH1
DCAF11
ZFAND2A
TRIM26
SSBP4
ZNF740
CSAD
PXYLP1
PRDM10
NAV3
CDS2
ARRDC2
ASCL1
GTF3A
OSBP
NLK
ATP1B1
GPR20
SHF
EIF2AK3
SKI
ZNF77
IL17RD
STIP1
RPS7
CSF3R
HMGCS1
PSMD6
SOD2
AHDC1
SERPINE1
STARD13
ART1
TCP10L
TRIM7
HAND1
RGS3
SLC25A25
SEPTIN4
ZC3H3
RAB37
ECE1
MDM2
GADD45G
SLC45A4
RAB11B
CAPG
ME3
KNL1
BRMS1
AGO1
ACYP1
CAPNS2
TRIB3
GADD45A
G3BP1
ZNF564
MYBPC3
LPCAT3
KMT5A
IKBKB
NCOA2
BORCS6
EVI5L
GOT1
SPRED2
KDM8
RTN4
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
MACROH2A1
CCL26
EMP3
FTL
SOCS2
ELL
SH2D6
CBX4
RGS12
HNRNPD
LMO4
RBM15
STX1A
TNFAIP2
POLG
METRN
COL21A1
CTSW
ADM
SLC35E2B
FAM107B
SMIM20
PDP2
TPCN1
TCTEX1D4
SLC7A5
PLK3
BTBD19
CRLS1
ZNF827
SYNJ2
GRSF1
B4GAT1
SCGB1A1
METTL3
LIG3
LMOD1
EVA1A
CORO1A
TCF7L2
HTR1F
MYRIP
MTF2
MBD6
DDIT3
MIDN
PNKD
METTL11B
RBFOX2
MNT
MYEOV
ZC2HC1C
CPSF4L
KBTBD11
MOB3A
IZUMO4
TRIM2
MSX2
GLRX5
ANTKMT
NEK1
CP
CLDN9
PKN2
FST
DAGLB
JUNB
GMEB2
WSB2
SLC6A12
SCHIP1
LCK
FAM167B
TMEM94
PYGL
CSNK1D
NAIF1
PLA2G2A
BFSP1
TUBA1C
CNKSR3
IFI16
ARHGEF3
UBE2F
CCDC43
TMEM212
SHB
ETF1
ARAP1
KDM3A
INAVA
SORL1
NCDN
KIAA0319L
PRMT5
NEK3
MRPS28
EIF3D
TLN1
SLC30A4
CREB3
ARID5A
NKX1-1
IGFBP7
CNPY3
NKD1
TESC
MPND
UNC5A
NAV2
SH3YL1
ACP1
FLAD1
CKS1B
SLC19A1
H3C12
KIAA1549
ABCA4
SH3BP1
FOXA3
PCM1
SCARB1
BCAR3
DIABLO
PPFIBP1
CMSS1
TACC1
TXNRD1
SPOCK2
LINGO1
ARID4A
SORBS2
KLF16
FGR
LMNA
ZBTB18
SIT1
H4C15
H4C14
H3C15
H3C14
NAGLU
PLEC
UBC
LRRC45
CENPX
CYP51A1
COX5A
MRS2
SERPINB1
RGS5
RIMKLB
MMD
RNF144A
HNRNPL
METTL26
ENPP3
PGP
SEC14L1
NRCAM
LRCH4
FBXO24
LNPEP
INKA2
CACNA1D
MYO1B
SEBOX
ARID2
DMD
HMGB1
CHGA
UACA
BAX
NCS1
RXRA
RNPEPL1
DUSP28
ANKMY1
CEP41
NR1D1
CIC
FRMD3
NAA10
ARHGAP4
INAFM2
BOLA2-SMG1P6
RPS6KA1
RNF149
UGP2
NRXN1
ATP6V1G3
CSRNP1
PECAM1
ETFBKMT
ITGB2
LOC102724265
CAND1
ALOX5AP
LIMA1
FRAT2
KIF3B
CPT1A
SMIM22
ROGDI
DNAJB3
SCNN1A
LTBR
CCDC38
AMDHD1
OTX1
KIAA0319
IL23R
PHB
KIF5C
STX16
HNRNPAB
NDUFV2
PRR14
FBRS
CCDC59
NOXO1
CCDC107
ARHGEF39
MRPS24
ANKRD39
DMBX1
SLC34A3
TRDMT1
LAPTM5
ARHGEF10L
HTR5A
CREB5
TES
PHETA1
NEDD9
TSHZ3
SMUG1
RNF166
PHRF1
CTU2
KCTD7
EFEMP2
GATA6
TCHP
RAC1
PSMB5
ZBTB45
OPLAH
INSM2
EIF4H
PCTP
NKIRAS1
TMCO6
TDG
C12orf73
DRD4
MBD2
LTBP3