ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX4671312 | SUM 159PT
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◣ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

SNAPC1
EAPP
MTRNR2L1
DUX4
BRMS1
B4GAT1
WDR74
STX5
KNL1
PPP6R3
ZBED9
SACM1L
SHF
BCAR3
DPP9
PRMT5
LUC7L2
FMC1-LUC7L2
FMC1
H4C8
GSTA4
FBXO31
MAP1LC3B
TRIM7
C8orf37
BORCS6
FRG2C
TTI2
FCGR3A
NDUFS7
SIT1
CCDC107
ARHGEF39
POLG
RPS29
HSPA6
CCDC200
POLR3E
ART1
UBC
COL23A1
HMGN4
H2BC17
H2AC17
OR2B2
MPZL1
RNASE4
ANG
ELF1
WBP4
PSMA3
TIA1
PCYOX1
NPR1
ILF2
TAF12
METTL26
WFIKKN1
LTA4H
IRX2
C5orf38
VSIR
PCGF2
DDIT4
CASC3
FRG2
NCOA7
RAB11A
NEMF
TMEM242
OR1F1
ZSCAN22
TMEM107
TMEM259
CNN2
MDM4
SMARCC2
POLDIP3
TPCN1
PLXDC1
FCGR3B
CCDC136
OPN1SW
DHRS3
GTPBP6
ZNF184
CFAP45
MTRNR2L2
MSH3
DHFR
IER3
FLOT1
TBL1X
PXK
CREB5
HES7
ALOXE3
OSGIN1
MAT2A
PPEF1
RS1
PARP16
MED16
ID1
ANGPTL4
ZNF839
STAT6
ABLIM3
ANP32E
LASP1
PHRF1
SIRT4
STX16
YARS1
S100PBP
RPL37
CARD6
WDR36
CSRNP1
MYC
SAR1B
PCLAF
TRIP4
ZNF827
BZW2
ANKMY2
METTL15
KIF18A
OR6S1
MAMDC2
MTF2
CDCA4
LOC102724770
DGCR6
ACSL1
OPA1
H4C12
H4C11
H2BC15
H2AC15
MYNN
ACTRT3
ZC3H10
RPL41
NFE2L2
NOP53
HIF3A
SLC44A1
SELENOH
FRA10AC1
SLC25A45
FRMD8
PARP2
CCNB1IP1
TRDMT1
H4C15
H4C14
H3C15
H3C14
H2AC19
H2AC18
GOT2
SUSD2
RAD54L2
ZMPSTE24
DCP1A
MNAT1
BCL3
SREK1IP1
CWC27
NME1-NME2
NME1
HSPE1-MOB4
HSPE1
HSPD1
EIF4G2
FBXO4
FAM227B
DTWD1
NDUFC2-KCTD14
NDUFC2
GBA
JUNB
GTF2H2C_2
GTF2H2
MAFK
ADAMTS9
NUF2
TSEN15
DNAH14
PTPN6
C12orf57
CCL20
SF3A3
OR2T1
PHC2
TRIAP1
COX6A1
MRPL40
HIRA
ABT1
ZFP36
PLEKHG2
MKRN3
MMP8
H3C4
H4C4
H2BC6
SERPINE1
STX1A
NDUFA12
ZNFX1
C11orf49
ATF3
LRRC59
SLC38A2
FUS
BCL2L1
R3HDM2
INHBC
MRI1
C19orf53
LY6K
ARL2
FAM180B
NDUFS3
KBTBD4
H3C13
H2BC18
OR2V2
SOAT2
IGFBP6
TMEM248
MTHFD2L
DRD4
PTPRH
ZSCAN9
TEX46
KDM1A
PSCA
MRPS17
ARID5B
KIF2C
MRPL21
IGHMBP2
CRYAA2
CRYAA
SNX17
EIF2B4
PTPRM
KLF9
TNFRSF10B
GTF2H2C
FOXN3
UBE2H
H4C2
H3C2
H2AC4
H4C1
H3C1
H1-1
CALM2
H4C3
H1-6
EPB41
OR14K1
OR14A2
ZFP36L1
EREG
HSP90AB1
RPL23
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
STUB1
TPK1
WDR24
JMJD8
ELOVL3
BBS1
NSUN4
TLR4
GYPC
ARID2
TUT7
PLK2
ROS1
TOP3B
ZNF219
TMEM253
EGFLAM
NUP54
RBFOX2
LTN1
LPP
GTF2A1
NACA
SRSF2
MFSD11
RIN3
H3C6
H1-3
H4C6
MLEC
SRP14
INTS12
GSTCD
HPD
MYBPC3
PSMD9
RPS2
RNF151
RPL3L
NDUFB10
HMGB1
USPL1
KLRC3
CYP20A1
NXF1
GADD45A
ENPP3
PHLDB2
MED23
CEBPB
UTP3
CDKN1C
NDUFS4
ZNF207
C17orf75
UBE2D3
SNAI2
PRLH
TRIB1
BSPRY
TACO1
RAB30
KLRC2
PSMF1
SLC33A1
NABP1
PLD1
PSMD3
KLF7
ART4
PDE4D
CFLAR
MRPL35
IMMT
LPIN3
DR1
PLIN3
SLC27A4
DUSP1
RPL10A
TMEM190
TMEM238
RPL28
PTPN21
SCNN1G
H2BC5
H1-4
NET1
CXorf58
SEC11A
JUN
HTR5A
TBC1D19
MCTP1
BHLHE40
TMEM167B
H2BC14
H2AC14
TMEM262
GADD45B
H4C5
H2BC7
H2AC7
PCBP3
CCDC9B
CHD1
PHGR1
RPS7
HES4
UBAC1
IL16
DRAP1
C11orf68
ZSCAN30
TRMU
CXCL8
MACC1
SRSF7
RBBP5
CLCN3
SPRED2
NEK1
STK17A
TATDN3
NSL1
KRT31
MTERF1
PPA2
USP17L21
USP17L20
USP17L12
USP17L22
TRIB3
GMEB2
FAM107B
EIF4A3
ZBTB40
CCNC
CDC14B
MRPS31
LIG3
TUBGCP3
DUSP10
FOSL1
CCDC85B
FIBP
ZNF460
PCMT1
HCAR2
PSMD12
LPIN1
SRP9
DYNLRB1
NTSR2
PSMC2
DNAJC2
SAV1
STK40
NDUFAF1
TRIM69
LURAP1L
PCMTD1
UNG
ALKBH2
FOXJ3
CDKN2AIPNL
CCDC85A
ALOX5AP
CCAR2
C8orf58
SNAP47
JMJD4
MRPS18C
HELQ
RTN4
LIMS1
BIRC3
KRT6A
DCAF10
CDC42
CCNL1
THAP9
SEC31A
RSRP1
MGST1
SUMF2
PRRT3
NEDD4L
TOB2
IL1R1
RXRA
GBX1
ZNF770
EIF3M
TAMM41
RPL27A
CCN5
RPL35A
IQCG
LMLN
ZWILCH
SNAPC5
RPL4
DPYSL2
ARHGDIA
P4HB
NDUFAF5
ESF1
SAMSN1
BLOC1S6
MRPS14
MAP4
PHACTR4
SLC7A11
C1QTNF1
HIP1R
IL1A
TBRG4
S100A2
AHCY
POLE4
POC1B-GALNT4
GALNT4
TUBA1C
SCNN1A
LTBR
SMIM3
INSYN2B
SLC6A19
MRPL39
NFAM1
PCID2
CUL4A
POLR3B
BTG1
DEF6
KANSL3
FER1L5
HNRNPAB
TRIOBP
RPL26
KRBA2
H3C10
H2BC13
H2AC13
ASB2
TRAP1
PPP1R11
POLR1H
SNX8
H1-2
TMEM158
H3-3B
UNK
ITPRIP
DMAP1
TNIP1
NUP107
PISD
RPS6
HOXA3
HOXA2
NPPA
DPY19L4
PTPRE
EIF3B
THOC3
AQR
ERCC1
SOD2
WTAP
SLC30A5
PAQR5
POMK
PSG1
MEIS1
COPS7B
ATF4
GNAI2
ITGB5
PDE6D
C8orf33
ISL2
PIKFYVE
SETD7
ASH1L
RANBP2
CCT2
ZKSCAN4
NKAPL
SUGCT
MPLKIP
MICALCL
WSB2
SSNA1
ANAPC2
COMMD2
GABARAPL1
DNAJC11
ATXN2L
FASTKD2
PEBP4
ASNS
ZBTB20
LOC644090
MBTPS2
PCNP
TGOLN2
TEFM
EEF1A1
ZC3H12A
SLC16A1
DCAF8
C12orf66
ARID3B
ZBTB45
SLC27A5
WDR97
MAF1
CYC1
STMN3
RTEL1
PDXK
ZDHHC3
EXOSC7
SNX14
ERRFI1
TMEM101
FAM43A
NMRAL1
HMOX2
WDR70
NUP155
RGPD8
RGPD5
RGPD6
STEAP2
PSG11
NKIRAS1
SLC35A3
SLC24A1
INTS14
CLDN16
TBC1D16
HEG1
RPL15
AGK
MAPK9
GNL2
PWP1
AARSD1
COQ2
SMCO2
CXCL3
LRRK1
ATP5MC2
SGCA
ANXA5
ARRDC1
NCF4
EHMT1
USP30
PFKM
ADGRG6
SENP1
PYROXD2
NSA2
GFM2
MFSD10
IFI16
KPNB1
MET
RTP3
GTF3C5
LTF
EPRS1
EXD2
UCHL3
COMMD6
NMNAT1
LZIC
SPRYD4
UBE2V1
TTC4
ZNF843
SLC22A15
NT5DC4
PPP1R35
ZCWPW1
MEPCE
FBXO22
NOCT
VPS52
RPS18
B3GALT4
GATD3B
GATD3A
SLC9B1
SLC16A7
LSG1
TNS4
STMP1
DSTYK
RPS5
MUC5AC
EEF1AKMT2
ABRAXAS2
CAMK2D
CENPP
NOL8
MRPL44
TMEM68
TGS1
AXL
MRPL22
GEMIN5
SSBP1
PSMB2
GOSR1
ATL1
MAP4K5
FBXW9
GNG14
LRP12
THSD1
CLUAP1
C16orf90
TBC1D22A
TNFRSF1B
WDR11
THOC1
MRPL1
H3C8
H2BC10
MIDEAS
NOL7
SOST
BORCS7
WASHC2A
CPEB2
PLAT
ATP1A1
CDK6
ZBTB38
EIF2D
CPNE7
METTL9
MPHOSPH10
MCEE
SH2B1
STN1
H4C9
FZR1
DOHH
H2BC12
H2AC12
TMEM223
TMEM179B
CELSR1
COX16
TIMP2
NDUFV1
RUNX1
CALM1
IGFBP1
ERCC6L2
SFPQ
RPL13
PCCB
MRPL20
CCNL2
POLR2C
CLN8
PXDC1
NPIPB9
RAET1E
TOMM7
ADGRF5
PSG4
CCDC59
CTF1
BCL7C
RRAD
CIAO2B
CES2
SRSF4
BDKRB1
CERS2
ANXA9
RINT1
PUS7
RPL5
ETV1
MBP
ST7L
CAPZA1
RCAN1
BCL9L
MAML3
ARL8B
VWA7
RNF223
SLC16A5
CAAP1
MRPS35
EGFR
ENKUR
IARS1
GGA2
NUFIP2
EIF2B5
TRIM60
ZFHX3
CELSR3
FAM162A
CCDC58
ITPKC
COQ8B
CALCB
NOXO1
RBM15B
MANF
SLC39A13
FAM53C
CDC25C
TBL3
RFFL
TOMM5
ZNF622
SQSTM1
CCDC88B
HMG20B
GIPC3
TES
GDF15
PARL
TM4SF19
HINT3
ACTN1
SNRPD1
GRPEL1
RTTN
CPED1
ANXA2
MRPS16
DNAJC9
SUCLG2
RPL22L1
METAP1
AHCTF1
NUGGC
ELP3
CTNNB1
HERC3
LAMTOR5
PYURF
PIGY
HNRNPA2B1
CBX3
DEPP1
INTS5
GANAB
C5orf51
CTSC
NANOS3
REXO4
ADAMTS13
PRDX1
ZNF205
STX10
IER2
PTP4A2
LRRC37A3
PHB2
RGS9
ADNP
ADAD2
HNRNPD
SPOP
KCTD5
MATR3
MT2A
YWHAZ
CCDC125
PLEC
PARK7
WNT9A
SLC17A3
RPL17-C18orf32
RPL17
C18orf32
RBM18
MRRF
H3C7
H2BC9
H4C7
OR4E2
OR4E1
TMA16
SNUPN
ERI1
KIAA1958
C9orf147
DHDH
CYB5R4
RNF14
NRF1
RRN3
S100A6
S100A5
GTF3C6
CCDC80
USP8
GABARAP
PHF23
DVL2
PCDH1
FUT8
ZG16B
R3HCC1
RHBDL1
RHOT2
RBM14-RBM4
RBM14
RARS1
BNIP1
CD5
CCDC174
DLX2
POMP
ELAPOR2
CLCF1
DLX1
KIZ
SNF8
NANS
F2RL3
SCAF11
NT5C
DNAJC10
TBRG1
ABI1
PCBP2
NUP214
ROR1
ATXN2
ARID1A
GPC1
RPS27L
LTBP3
IL1RAP
USP53
PKN2
CXXC5
SLC38A1
KRT80
RNF213
MFN1
LMTK2
CARNMT1
EGLN1
ZNF335
RABL2B
RABL2A
PSMD1
RWDD1
MAPKAPK5
TAOK3
SUDS3
NME6
CACTIN
NUP85
POLR3F
DZANK1
FAM187A
EFTUD2
CCDC103
NVL
IPO13
DYNC1LI2
POLR2E
GPX4
VDAC2
HSPA9
GOSR2
VTI1B
PSMG2
CEP76
NUP205
MRPS7
MIF4GD
GGA3
HADHB
HADHA
RPL21
S1PR4
REXO1
NCLN
TBCK
AIMP1
EXOSC5
BCKDHA
C19orf48
NNAT
BLCAP
DCTN1
TSNAX
STAM
ATP5MG
SLC35B1
TSN
STAM2
SEC61B
ALG2
FARSB
LYRM4
FARS2
SRD5A1
PNO1
PES1
PAK1IP1