ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584309 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◢ SRX3584308: iPSC derived chondrocytes

◣ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
RABL2B
RABL2A
PSMD1
NME6
MAPKAPK5
NUP85
DUX4
LBX1
CACTIN
RWDD1
G6PC2
VDAC2
IPO13
TAOK3
SUDS3
HSPA9
NVL
NNAT
BLCAP
NEUROG2
POLR3F
DZANK1
PSMG2
CEP76
DYNC1LI2
FAM187A
EFTUD2
CCDC103
WNT1
NUP205
HADHB
HADHA
STAM
VTI1B
RPL21
LYRM4
FARS2
ARF1
POLR2E
GPX4
GOSR2
C19orf48
ATP5MG
FARSB
CAPRIN1
ACTR10
S1PR4
NCLN
ZNF503
FZD8
PES1
EXOSC5
BCKDHA
TBCK
AIMP1
SRD5A1
SEC61B
ALG2
TSNAX
ZNF576
IRGQ
REXO1
MRPS7
MIF4GD
GGA3
UPF2
TSN
SKP1
LOC102724770
DGCR6
STAM2
TTC8
DCTN1
SLC35B1
ADNP2
RBBP5
CALCOCO1
PAK1IP1
C6orf52
RPL35A
IQCG
LMLN
DPH6
SUPV3L1
PCBP1
ITGB6
PI4KB
COX7A2L
PNO1
GOLGA5
ZNF608
FRG2C
VARS1
GLRA1
SART3
ISCU
ZRANB2
PDAP1
BUD31
UFM1
PPP1R1B
SFI1
EIF4ENIF1
RABGGTB
PLAGL1
ANAPC7
ICE1
PROSER1
NHLRC3
SERINC5
PSMD12
ANK2
DNAJB7
XPNPEP3
ST13
ICMT
HES3
RPS12
MYLK4
SELENOF
HS2ST1
NDUFA4
RPS23
ATP6AP1L
SMC2
FABP7
SMPDL3A
UNKL
C16orf91
FGF19
ETS1
USP1
TMED1
PIP4P1
OSGEP
APEX1
RBKS
BABAM2
HOXA3
HOXA4
HSPA1B
ADK
AP3M1
TLE4
HES1
EVA1A
DBX1
RAB11FIP1
C6orf47
APOM
BAG6
RPS27A
CLHC1
ZFHX4
PARP11
RHBDD3
EWSR1
IGFBP2
ARID3C
DCTN3
MRPS5
VEZT
FGD6
RIMKLB
SF3B3
COG4
PIN4
LARP7
TRABD2B
MUC20
PAF1
CDX2
BFSP1
RGS12
FAM104A
C17orf80
NEUROG3
TMEM120B
ARHGAP11A-SCG5
ARHGAP11A
ABCG2
MRPL3
DMRT3
ME3
PALM2AKAP2
LRATD2
BNIP3
PRDM12
UBE2I
PRRX1
CERCAM
ARHGAP10
NFKBIL1
DDX39B
ATP6V1G2
BRINP1
TAF9
RAD17
AK6
COMMD1
CCT4
FOXP2
URM1
MEIS2
LAMA4
C5orf63
SYBU
OR6B2
NDUFA10
BICRA
NR2F1
SOX21
ARHGAP24
TPM1
VIP
SYNPO
MET
RUNX1T1
MXI1
ATOH1
MRTO4
EMC1
GAS7
RPS29
LRR1
FOXD3
TMEM14A
GMPR
NOTCH2
DDAH1
CCN1
MALRD1
FAM222A
NAV3
FRG2
FXYD2
DSCAML1
ASXL3
SKIL
RPL7
RDH10
EIF2S3
PRUNE2
LRAT
CACNA1D
ERRFI1
TM9SF1
IPO4
TSSK4
IRF2BP2
OR10AC1
SUCLG1
SCGB1A1
PCDH11Y
PTGES2
PAX8
INSM1
IL17RD
DIO2
HOXB3
HOXB4
OPN4
NCOA7
SEC11C
KDM8
HOXD3
FGFR2
CEP41
TPST2
ID1
LMO4
TMEM275
PRDM13
LZTS1
PDHB
SEC22B
FRMD7
TLE1
TPRA1
MCM2
UNCX
HOXD4
OR8J1
NUTM2D
NHS
RAI14
SMARCA2
ATOH8
SLC7A5
SPACA1
CLDN11
METTL24
MSX1
RBBP7
CPA1
CCDC33
GTF3C4
DDX31
PDE1B
COL17A1
LRIG1
PDZRN3
BAIAP2
ACSS3
PDHX
APIP
GPR176
NEK7
LRGUK
CLEC18C
HK3
PKHD1
PPFIBP2
RIC8B
PPP1R1A
SMURF1
ANKLE2
FOXB2
CITED2
PMAIP1
TLE3
DTX4
TMEM107
TDG
C12orf73
GADD45GIP1
KDM2B
NEUROD1
WT1
SYNPR
GGCT
HNF1A
OAZ3
MRPL9
GATA6
CYP26A1
KIF26A
METTL11B
ALDH1A2
DLX4
TPO
STXBP5L
CLEC19A
HOXB1
TMA16
DUSP6
RFX2
NRARP
RPL34
LRIG3
MYO10
PAH
ASCL1
RGL1
DIPK1B
GORAB
DAPL1
SPTBN1
SALL1
FHL1
SLA
UBE2QL1
RABGAP1L
PKDCC
GRIK2
TRIM71
SULF1
CDH16
CHODL
TLE2
EVX1
ZNF214
NLRP14
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
ARHGEF28
B3GALT5
SEMA6D
TRAF3IP2
CP
VGLL4
FEZF2
AQP6
TBX3
TMEM70
ELOC
CAMTA1
ELMOD2
CCDC200
MBNL3
TNNI3K
NEUROG1
FREM1
STK36
RNF25
RBM15
LRRC10B
CDC73
KIF21B
KLHDC8A
KBTBD8
ZFX
PANK4
HES5
CD69
LPIN1
ZFAND1
CHMP4C
PIM1
TANC1
MDFIC
MSI1
DMBX1
ALPL
NEK3
NEBL
SLAMF8
DAAM1
RPN1
DDX3X
ZP4
PHC2
NFIA
MAB21L2
PDE4DIP
RHOB
PCBD2
NRXN1
CCDC198
PTCHD4
POP5
GFRA3
BECN2
CNTN1
ZFHX3
HOXC4
ZGPAT
ARFRP1
LHX2
PIPOX
C10orf90
TESC
YAP1
CR1L
NECTIN1
FBXL18
ACTB
BNC2
EGF
SNAPC1
CATSPERG
CLDN2
AMD1
EVX2
STARD13
WRAP53
TP53
ZPBP
FOSB
USP17L21
USP17L20
USP17L12
USP17L22
NXPH4
HOXA1
HOXA2
CNPY2
SOCS3
LRRC1
PDE6B
CLGN
MEF2C
PRR16
FOXP1
ELMO1
FABP5
CABP7
OCLN
KMT2A
PSMB5
RASL12
KBTBD13
CREB5
PLPPR1
CNN3
ZNF367
TP53INP1
PGLYRP1
IGFL4
SOX6
HNMT
MEOX1
CDPF1
VCAN
MEIS3
HHIP
HNRNPA2B1
CBX3
MUSTN1
ITIH4
SCN5A
CBFA2T2
ZNF746
SALL4
TBC1D8
CXCL12
TEX2
CETN1
RBP3
PLEKHA5
SLC39A6
NRG2
CRABP2
RPL17-C18orf32
RPL17
REC8
EFNA5
ALKBH5
IGFN1
RARA
PAM
SOX5
SCARF1
RILP
ABLIM3
GADD45G
DHRS9
TMEM212
NMNAT2
LOC102724265
NCOR2
ABCB5
PCBD1
CADM3
SKA2
PRR11
LMO1
LIN28B
SKOR1
C1orf226
HTR1F
GUCY1A1
PLCH1
PDE12
ADM
FIGNL2
GNG12
GUCY2C
ZNF585B
ZNF383
CEBPA
KCNIP4
ENO1
ERCC1
ERLIN2
RFX6
BBS9
NELFA
CLEC18A
GNAS
DRD2
SYCN
NCCRP1
ENPP3
REV3L
ECM1
EPB41L2
ADO
CSN3
MIER1
DNAI4
C8B
PDPN
ID2
KRT20
PJA2
NPAS1
SMIM28
CRYAA2
CRYAA
PCDH18
PITPNM3
ACP7
FAM107A
THEMIS
RPL9
LIAS
KRT16
NEUROD4
LIN28A
DHX32
MYH2
FILIP1L
CD79A
ARHGEF1
GSG1
ADAMTS14
B3GALT2
FSTL1
DLL4
NCOA2
PKNOX2
KCNK16
RASL10B
RAN
SREK1IP1
CWC27
TMEM9
PGF
FOXL3
SPG7
CDC42EP2
GATA3
EFNB2
RFX3
JAKMIP1
MTMR7
LIX1
LIMK2
POLR1D
LNX2
CFAP221
SPCS1
GLT8D1
DMD
TTR
CDRT15L2
WDR59
RCOR1
GSX2
SYDE2
USP17L13
USP17L11
USP17L18
USP17L10
FOXB1
BTBD1
LDHB
GALNTL5
CDX1
CACNA1H
SLC1A3
TNFRSF19
GAD2
LMO3
PRRC2C
AGMO
VAV3
GCSAM
MAP2
LRRC4
VSTM2L
ARL4C
OPLAH
SOGA3
SOST
EOMES
GZMK
DUSP2
ASTL
GTF3A
NEDD9
PAX3
PCDH8
FGFR4
DACT2
HAND1
IKBKB
CFAP69
MNX1
LRP2
DUSP29
KCNN4
DLG2
IRS2
DGKZ
PRSS47
ARMC12
CCN2
KLHL7
TSPAN13
PHOX2B
BMPR1B
CDC42BPA
CLMP
OR5A2
OR5A1
LEKR1
TBL1XR1
SH3BP5
MIDEAS
CPSF4L
OTX1
TMCC3
TMEM97
ADGRL2
PRM3
PRM2
PRM1
TNP2
TYRO3
CYRIB
NBPF9
TRIM65
MRPL38
PEX2
IPO11
DIMT1
FABP9
KDR
ZCCHC13
GJA3
SLC2A9
SLC10A2
WBP1L
UGT1A4
TMEM132C
UGT1A5
METTL3
SALL2
USP17L19
TRMT9B
PNKD
FLVCR2
KRTAP12-1
PTPRZ1
PPP1R12B
CHD8
SERPINA1
SFTPC
LGI3
BMP1
CA14
KAT6B
CLEC18B
PRSS23
CS
ZBTB18
VANGL2
LOC102723360
LHX5
CDK18
ASPH
EFNB1
BCO1
GPC4
MBTPS1
SH2B1
GFRA1
HES4
NAF1
TAGLN3
SNCG
MMRN2
AHSP
VASN
GPR20
TCF4
PAX7
ST18
MSX2
AGPAT4
GPC6
RXRG
RPS24
POLR3A
NR2F6
ABAT
PMFBP1
INHBA
EPB41L5
SOAT1
SLC18A1
FAM171A2
RTP4
ABL1
ADGRL3
ASB6
TMEM72
BRWD1
RCOR3
CDH18
PFKM
DICER1
KIAA1958
C9orf147
CCND1
FAM181A
FOXA2
FLRT3
ME2
TRDMT1
AIPL1
PIMREG
IFNA21
MYRIP
PCBP4
CRB2
GPR62
PADI2
VOPP1
CER1
ARHGAP22
NKX2-6
RBP1
CENPS-CORT
CENPS
CMTR1
SLC22A2
EAPP
TAS2R9
TAS2R8
TAS2R7
CCDC141
RAPGEF4
MAFA
PPP1R16B
SUPT20HL1
NOTCH1
CNR1
CNOT2
MECOM
PAK3
ASB1
PREX2
SLC25A6
PDX1
MTRNR2L1
RARB
MTRNR2L2
MSH3
DHFR
MTRNR2L8
SOAT2
IGFBP6
SP2
DHRS3
ARID3B
SPATC1L
NFE2
IER3
FLOT1
H2BU1
H2AW
NDUFS7
ZSWIM1
SPATA25
NEURL2
ZNF775
DPP9
TBL2
CTSA
USP29
GPR108
BHLHE40
LEFTY2
PCGF1
TRIP10
LBX2
VSIR
WDR74
STX5
MAMDC2
TTI2
HOXA5
ARHGDIA
ASB2
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
TAF12
DNM2
MLEC
SP1
SLC39A7
RXRB
HSD17B8
TBX2
COL23A1
S100A10
FBXO31
NPAS4
MINDY2
HPD
SP5
MAP1LC3B
HUS1
SYTL3
PPP6R3
ANKRD28
H2BC17
H2AC17
RPS10-NUDT3
RPS10
COL11A2
PDE4D
EXOC2
XKR7
FRA10AC1
RPL22
RNF207
RAB5B
PMEL
CDK2
HPCAL1
AXDND1
E4F1
SMAD3
CCNDBP1
MRPL34
DDA1
ABHD8
BAZ2A
STX18
CHN2
HOXC6
KDM6B
FRYL
STAP2
ID3
CPVL
KANSL3
FER1L5
OTUD7B
ARSG
TMEM242
DYNLT1
DONSON
DOLPP1
ARRDC4
PGK1
ATP5F1B
SEPTIN9
ATF6
ETAA1
POR
CERK
RBPJ
SIRT4
EXOSC4
SH3BP2
JUP
MFSD10
UPF3A
MRPL20
PPCDC
RARG
PC
NINJ2
RHBDD1
BCL3
KATNB1
QPRT
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TMEM101
TRIB1
CCDC174
RING1
SRSF11
ABHD2
CCNL2
ABCC10
SREBF1
ADAP1
ZNF687
SMARCD2
BMF
RFX1
CLCN3
MTMR4
LFNG
SMG6
KAZALD1
GATA4
ATP1A1
GPCPD1
NBPF1
ZFP36
PLEKHG2
CBX5
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B