ChIP-Atlas: Target genes

Potential target genes for RARA

Query protein: RARA
Distance from TSS: ± 1 kb  ± 5 kb  ± 10 kb
Sort key: SRX3584308 | iPSC derived chondrocytes
 
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  1000 750 500 250 1 0  (Values = Binding scores of MACS2 and STRING)

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Links: Movie and Document for ChIP-Atlas Target Genes
RARA's Target genes

◢ RARA: Average

◢ SRX2748853: Adenoid cystic carcinoma

◢ SRX2748855: Adenoid cystic carcinoma

◢ SRX10442515: BE(2)-C

◢ SRX8814860: BE(2)-C

◢ SRX2635935: Hep G2

◢ SRX2635936: Hep G2

◢ SRX25244558: hESC derived endodermal cells

◢ SRX25244559: hESC derived endodermal cells

◢ SRX25244560: hESC derived endodermal cells

◢ SRX25244561: hESC derived endodermal cells

◢ SRX21236745: IMR-32

◢ SRX21236746: IMR-32

◢ SRX21236747: IMR-32

◢ SRX21236748: IMR-32

◢ SRX3584302: iPSC derived chondrocytes

◢ SRX3584303: iPSC derived chondrocytes

◢ SRX3584304: iPSC derived chondrocytes

◢ SRX3584305: iPSC derived chondrocytes

◢ SRX3584306: iPSC derived chondrocytes

◢ SRX3584307: iPSC derived chondrocytes

◣ SRX3584308: iPSC derived chondrocytes

◢ SRX3584309: iPSC derived chondrocytes

◢ SRX3584310: iPSC derived chondrocytes

◢ SRX3584311: iPSC derived chondrocytes

◢ SRX3584312: iPSC derived chondrocytes

◢ SRX3584313: iPSC derived chondrocytes

◢ SRX6039037: iPSC derived chondrocytes

◢ SRX6039038: iPSC derived chondrocytes

◢ SRX6039039: iPSC derived chondrocytes

◢ SRX6039040: iPSC derived chondrocytes

◢ SRX6039041: iPSC derived chondrocytes

◢ SRX6039042: iPSC derived chondrocytes

◢ SRX3584300: iPS cells

◢ SRX3584301: iPS cells

◢ SRX19662659: Ishikawa

◢ SRX19662660: Ishikawa

◢ SRX4671297: NAMEC8

◢ SRX4671298: NAMEC8

◢ SRX4671299: NAMEC8

◢ SRX014752: NB-4

◢ SRX014770: NB-4

◢ SRX17639399: NB-4

◢ SRX17639400: NB-4

◢ SRX17639401: NB-4

◢ SRX17639402: NB-4

◢ SRX8814876: Neuroblastoma

◢ SRX9607665: NTERA-2

◢ SRX9607666: NTERA-2

◢ SRX1035586: SK-N-SH

◢ SRX1035587: SK-N-SH

◢ SRX1035588: SK-N-SH

◢ SRX1035589: SK-N-SH

◢ SRX4671312: SUM 159PT

◢ SRX4671313: SUM 159PT

◢ SRX4671314: SUM 159PT

◢ SRX19662634: T-47D

◢ SRX19662636: T-47D

◢ SRX682379: TSU-1621MT

◢ SRX014781: UPR9

◢ SRX014782: UPR9

◢ RARA: STRING

ZNF335
PSMD1
NUP205
RABL2A
G6PC2
POLR3F
DZANK1
NME6
IPO13
RABL2B
NVL
CACTIN
RWDD1
TAOK3
SUDS3
RPL21
LARP7
FARSB
C19orf48
TBCK
AIMP1
DUX4
NUP85
POLR2E
GPX4
HSPA9
PAK1IP1
C6orf52
VDAC2
SERINC5
MAPKAPK5
PES1
PPP1R1B
ATP5MG
FAM187A
EFTUD2
CCDC103
S1PR4
NCLN
ANAPC7
SEC61B
ALG2
ZFHX4
MRPS7
MIF4GD
GGA3
HADHB
HADHA
PSMG2
CEP76
GOSR2
ZRANB2
DCTN1
VTI1B
EXOSC5
BCKDHA
ZNF576
IRGQ
NNAT
BLCAP
PNO1
UPF2
RPL35A
IQCG
LMLN
STAM
LYRM4
FARS2
DYNC1LI2
ARF1
DNAJB7
XPNPEP3
ST13
ZNF608
STAM2
PI4KB
SART3
ISCU
NEUROG2
SF3B3
COG4
ADNP2
PCBP1
PSMD12
TSN
TMED1
SELENOF
HS2ST1
RPS27A
CLHC1
LOC102724770
DGCR6
FZD8
CAPRIN1
NDUFA4
CDX2
RHBDD3
EWSR1
UFM1
ACTR10
RAB11FIP1
ADK
AP3M1
WNT1
SRD5A1
RPS12
LBX1
FABP7
SMPDL3A
VARS1
ZNF503
RBBP5
CALCOCO1
RPS23
ATP6AP1L
SMC2
SUPV3L1
TSNAX
MRPL3
SLC35B1
PRDM12
ITGB6
ERRFI1
TPM1
EVA1A
ANK2
REXO1
HSPA1B
SKP1
TTC8
COX7A2L
PDAP1
BUD31
DEFA5
GLRA1
FGF19
RABGGTB
NR2F1
PIP4P1
OSGEP
APEX1
C6orf47
APOM
BAG6
PROSER1
NHLRC3
ETS1
UNKL
C16orf91
LAMA4
FOXP2
ARID3C
DCTN3
ICE1
PIN4
MYO10
DDAH1
CCN1
LRGUK
ARHGAP11A-SCG5
ARHGAP11A
PALM2AKAP2
FAM104A
C17orf80
RIMKLB
MRPS5
MUC20
GOLGA5
DMRT3
MYLK4
NAV3
DPH6
CHODL
LRIG3
TMEM107
PARP11
PAF1
VIP
ME3
TMEM14A
SFI1
EIF4ENIF1
USP1
RBKS
BABAM2
SYNPO
SYBU
NEK7
TMEM120B
PPFIBP2
PTGES2
NHS
ICMT
HES3
IGFBP2
PDHB
MALRD1
FEZF2
SOX21
DBX1
PLAGL1
DAPL1
NOTCH2
RGS12
RABGAP1L
NEUROG3
ABLIM3
TDG
C12orf73
FOXD3
PAX8
RPL7
RDH10
BICRA
TLE4
PDZRN3
SMURF1
MXI1
SOAT2
IGFBP6
RGL1
SEC11C
RFX2
ALDH1A2
ABCG2
VEZT
FGD6
SMARCA2
PHC2
KCNK16
CLDN11
ASXL3
ARHGAP10
UBE2I
LRATD2
NFKBIL1
DDX39B
ATP6V1G2
KRT20
MEIS2
ARHGAP24
PHOX2B
FOXB2
SPACA1
SUCLG1
HOXA3
HOXA4
FRG2C
TLE1
KDM8
NMNAT2
HES1
EIF2S3
LRIG1
GPR176
RPS29
LRR1
PCDH11Y
COMMD1
CCT4
ZNF585B
ZNF383
SEMA6D
CEP41
STK36
RNF25
CCDC33
LMO4
MRTO4
EMC1
OR6B2
NDUFA10
ARHGEF28
SCGB1A1
C5orf63
C8B
REV3L
URM1
FRMD7
HOXB1
CCDC88C
NUTM2D
MNX1
TAF9
RAD17
AK6
CACNA1D
ACSS3
VGLL4
TMEM275
TM9SF1
IPO4
TSSK4
BRINP1
LDHB
VCAN
CBFA2T2
USP29
AQP6
GATA6
HHIP
RAI14
GAS7
PRRX1
NEK3
B3GALT5
BECN2
KDM2B
CERCAM
GADD45GIP1
SULF1
PGLYRP1
IGFL4
ZFAND1
CHMP4C
ATOH1
STARD13
MET
METTL24
FAM222A
ZFX
TLE2
SUPT20HL1
PLEKHG4B
TEX2
STXBP5L
CITED2
FHL1
ALPL
SOGA3
WT1
CLEC18C
MED4
BFSP1
PKDCC
METTL11B
COL17A1
GORAB
NRG2
NCOA7
PSMB5
EVX1
KIF16B
ELMOD2
PPP1R1A
PCBD1
BNIP3
RPS24
POLR3A
IRF2BP2
BAIAP2
SALL1
TP53INP1
SYNPR
TLE3
HK3
TPO
BTBD1
CNPY2
RPL34
RBP3
PITPNM3
ALKBH5
GGCT
TMA16
FGFR2
SEC22B
PJA2
DTX4
CNTN4
PLEKHA5
TBX3
USP17L5
USP17L30
USP17L29
USP17L28
USP17L27
USP17L26
USP17L25
USP17L24
SLC7A5
TYRO3
TTR
MTMR7
LMO1
PDE6B
TNFRSF19
AMD1
CETN1
PDE4DIP
MAB21L2
TESC
CR1L
PPP1R16B
LRRC1
GRIK2
TPST2
SLA
MOB3B
OCLN
DMBX1
HNF1A
MSX1
PKHD1
NPAS1
LZTS1
FREM1
SECISBP2L
GFRA1
TANGO6
FOXB1
DIO2
TFAP2B
FRG2
NEUROG1
CLDN2
PDE1B
NXPH2
EVX2
TRABD2B
TPH2
FILIP1L
PDE12
CDH18
RUNX1T1
PPP1R12B
DHX32
MBNL3
RXRG
GMPR
OAZ3
MRPL9
CYP26A1
FRS2
RFX3
APTX
DNAJA1
C1orf226
PIK3C2A
SLAMF8
NEUROD1
NECTIN1
CCDC198
SLC14A1
HOXA1
HOXA2
VOPP1
CD69
GTF3C4
DDX31
HOXB3
DLX4
HOXB4
CATSPERG
IL17RD
KLHL7
EFNB2
ADO
TAPT1
RPN1
CP
ELMO1
TRMT9B
ZPBP
GCSAM
CLGN
SMIM28
NCOR2
CS
CADM3
TBC1D8
SLC10A2
AGMO
METTL3
SALL2
VSIG10L2
RARB
SNAPC1
KLHDC8A
MDFIC
HPCAL1
TCF7L2
NID1
C8orf34
SP8
ERLIN2
ZNF367
CXXC4
NFKBIZ
GALNT14
SLC15A3
PPP2R5A
PANK4
HES5
NOTCH1
CXCL5
PPBP
PF4
HOXD3
HOXD4
MEF2C
PRR16
CNN3
TTI2
CPA1
ZCCHC13
BAZ2B
SOX6
EGF
BBS9
DIPK1B
CPEB2
MBTPS1
ADAMTS18
BHLHE22
SALL4
CDC42BPA
ATOH8
UNCX
SNCG
MMRN2
CTXN3
SLC39A6
CDH16
TNNI3K
ST8SIA3
SCHIP1
SOST
ZFHX3
HAPLN1
HOXC4
PRDM13
PTGR1
CDC73
DUSP6
HNMT
ADGRL2
CEBPA
ECM1
KRT16
CER1
CAMTA1
RBBP7
ID1
KIF21B
CRYAA2
CRYAA
ADM
PAH
ASCL1
SYTL2
ZGPAT
ARFRP1
RARA
ZDHHC1
LOC102723360
RHOB
ZNF214
NLRP14
HAND1
PAM
FGD4
CHD8
GATA3
TCF4
THRA
PARS2
GZMK
GAD2
EPB41L5
RTP4
ST18
ZFHX2
OR10AC1
CLEC19A
PRRC2C
OR5A2
OR5A1
TMEFF2
KCNN4
TRIM65
MRPL38
TMEM9
ABCA4
JAKMIP1
CLEC18B
AGPAT4
OTUD6A
AWAT2
TCF12
EPB41L2
ABHD17C
CBY2
PCBD2
SPG7
NINL
KBTBD8
TMCC3
NFIA
ZBTB2
PRKCA
LIMK2
NXPH4
FOXP1
NUP93
WRAP53
TP53
CCDC169-SOHLH2
CCDC169
TMEM132C
DACT2
RIC8B
RBM20
P2RY14
AMBN
CUBN
ID2
ZBTB38
LIN28A
KMT2A
ALG14
LIPG
ZC3H12B
CCND1
PDPN
GJA1
SPAM1
WDR59
CD83
LMO3
TRIM2
KCNIP4
SOX5
TNRC6B
PADI2
SASH1
PDHX
APIP
ZNF746
HTR1F
MIER1
DNAI4
FOXA2
PGM2L1
ALOX5AP
GUCY1A1
PHACTR2
HAAO
TANC1
AJUBA
SSBP3
NOTCH2NLB
OAZ2
FLNB
EIF1
AIPL1
PIMREG
CNTN1
SLC2A9
CFAP69
ARSF
NEUROD4
CARD10
LRRC4
MXRA7
RIPOR2
CHD1
TFDP2
MAP2
DMRTA1
INSM1
RASL12
KBTBD13
LHX2
RAX
AXDND1
PMFBP1
CELF4
DLGAP1
NDUFB3
FAM126B
BMPR1B
LRRC10B
TWIST1
LDLRAP1
ARMC12
PCDH18
TSPAN11
MBNL1
DAAM1
TAS2R9
TAS2R8
TAS2R7
CCDC200
ZNF385B
KCNN2
ARHGEF10
PCDH17
BNC2
FAM107A
SPON1
FRYL
ANKS1B
FAM171A2
AKAP7
CREB5
PRRC2B
UTRN
ACBD5
TPRA1
MCM2
REC8
CCDC141
ITFG2
FERD3L
GPC6
SOCS3
DMD
LIN28B
APOLD1
CCDC59
APP
IPO11
DIMT1
BMP5
CPA2
FAM120B
DLL1
FHDC1
ERCC1
GNB2
ACTL6B
IGFN1
FMO3
H2BU1
H2AW
THRAP3
CDC42EP2
RPS10-NUDT3
RPS10
LAPTM4A
PON2
LCA5
FABP5
SH2B1
VANGL2
MAFA
RFX6
POU2F1
TNFSF18
GALNTL5
PAX3
RPL17-C18orf32
RPL17
ARID5B
CDK14
JDP2
FABP9
USP17L21
USP17L20
USP17L12
USP17L13
USP17L11
USP17L18
USP17L10
SHOX2
RSRC1
YAP1
SFPQ
ELAC1
PLAAT4
SVOPL
MTRNR2L1
MTRNR2L2
MSH3
DHFR
MTRNR2L8
DUSP29
SP2
EAPP
SKIL
DHRS3
ARID3B
SPATC1L
NFE2
PMAIP1
IER3
FLOT1
NDUFS7
ZSWIM1
SPATA25
NEURL2
ZNF775
ZP4
KAT6B
DPP9
TBL2
CTSA
GPR108
BHLHE40
LEFTY2
PCGF1
TRIP10
SPCS1
GLT8D1
LBX2
VSIR
WDR74
STX5
MAMDC2
HOXA5
ARHGDIA
ASB2
P4HB
PPP1R35
NBEAL2
CCDC12
CDCA7L
TEPSIN
NDUFAF8
TAF12
LPIN1
DNM2
MLEC
SP1
SLC39A7
RXRB
HSD17B8
TBX2
ANKLE2
COL23A1
S100A10
FBXO31
NPAS4
DLL4
MINDY2
HPD
SP5
PRUNE2
MAP1LC3B
HUS1
SYTL3
CRABP2
PPP6R3
ANKRD28
H2BC17
H2AC17
COL11A2
TMEM70
ELOC
PDE4D
EXOC2
XKR7
FRA10AC1
RPL22
RNF207
RAB5B
PMEL
CDK2
FXYD2
E4F1
SMAD3
CCNDBP1
MRPL34
DDA1
ABHD8
BAZ2A
STX18
CHN2
HOXC6
KDM6B
STAP2
ID3
CPVL
KANSL3
FER1L5
OTUD7B
ARSG
TMEM242
DYNLT1
DONSON
DOLPP1
ARRDC4
ASB6
PGK1
ATP5F1B
SEPTIN9
ATF6
ETAA1
POR
CERK
POP5
RBPJ
SIRT4
EXOSC4
SH3BP2
JUP
NELFA
MFSD10
UPF3A
ARHGAP22
MRPL20
PPCDC
RARG
PC
NINJ2
RHBDD1
BCL3
KATNB1
QPRT
PANK2
PTK2B
SQSTM1
KCNAB2
SHC1
TMEM101
TRIB1
CCDC174
RING1
SRSF11
ABHD2
CCNL2
ABCC10
SREBF1
ADAP1
ZNF687
SMARCD2
BMF
RFX1
CLCN3
MTMR4
LFNG
SMG6
KAZALD1
GATA4
ATP1A1
GPCPD1
NBPF1
ZFP36
PLEKHG2
CNOT2
CBX5
MIDEAS
TRIM46
KRTCAP2
SLX1B
SLX1A
BOLA2B
BOLA2
NRL
C9orf92
PCGF2
RNF34
TOP2A
PRKAG2
CALM2
RASSF5
PSPN
ALKBH7
TLX2
NOL4L
EIF1B
HSPA1L
HSPA1A
HEXIM2
INHBE
GLI1
ANKHD1-EIF4EBP3
ANKHD1
PPP1R18
NRM
MRPS31
HNRNPA2B1
CBX3
LRRC40
FURIN
NUBP1
THOP1
SGTA
SACM1L
KAT7
DLG2
TRAF7
ANGPTL4
DLC1
USP17L22
RHOQ
ATP6V1E2
PCNA
ITGAV
ECEL1
STAT1
BAHCC1
NFKBIA
RPLP1
ARHGAP30
IQSEC3
RAB26
POLDIP3
NR2F6